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  glioblastoma [Mes]

Overall DesignOperative specimens from five glioblastoma patients (MGH26, MGH28, MGH29, MGH30, MGH31) were acutely dissociated, depleted for CD45+ inflammatory cells and then sorted as single cells (576 samples). Population controls for each tumor were isolated by sorting 2000-10000 cells and processed in parallel (5 population control samples). Single cells from two established cell lines, GBM6 and GBM8, were also sorted as single cells (192 samples).
SummaryWe report transcriptomes from 430 single glioblastoma cells isolated from 5 individual tumors and 102 single cells from gliomasphere cells lines generated using SMART-seq. In addition, we report population RNA-seq from the five tumors as well as RNA-seq from cell lines derived from 3 tumors (MGH26, MGH28, MGH31) cultured under serum free (GSC) and differentiated (DGC) conditions. This dataset highlights intratumoral heterogeneity with regards to the expression of de novo derived transcriptional modules and established subtype classifiers.
Dataset viewGSE57872
PMID24925914

Samples in glioblastoma [Mes]

Displaying 41-50 of 101 results.
SeriesSampleInstrumentOrganismTitleCell Source
GSE57872GSM1395665Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH28_G03glioblastoma [Mes]
GSE57872GSM1395666Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH28_G04glioblastoma [Mes]
GSE57872GSM1395668Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH28_G06glioblastoma [Mes]
GSE57872GSM1395669Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH28_G07glioblastoma [Mes]
GSE57872GSM1395671Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH28_G09glioblastoma [Mes]
GSE57872GSM1395673Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH28_G11glioblastoma [Mes]
GSE57872GSM1395674Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH28_G12glioblastoma [Mes]
GSE57872GSM1395675Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH28_H01glioblastoma [Mes]
GSE57872GSM1395677Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH28_H03glioblastoma [Mes]
GSE57872GSM1395678Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH28_H04glioblastoma [Mes]

Gene rank in glioblastoma [Mes]

Displaying 5871-5880 of 5942 results.
Rank orderGene SymbolEnsembl ID
5871DCNENSG00000011465
5872C11orf65ENSG00000166323
5873BACH2ENSG00000112182
5874TFR2ENSG00000106327
5875ANKRD19PENSG00000187984
5876OMGENSG00000126861
5877RGS1ENSG00000090104
5878HECTD3ENSG00000126107
5879NDNFENSG00000173376
5880PPP1R3CENSG00000119938