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  glioblastoma [None]

Overall DesignOperative specimens from five glioblastoma patients (MGH26, MGH28, MGH29, MGH30, MGH31) were acutely dissociated, depleted for CD45+ inflammatory cells and then sorted as single cells (576 samples). Population controls for each tumor were isolated by sorting 2000-10000 cells and processed in parallel (5 population control samples). Single cells from two established cell lines, GBM6 and GBM8, were also sorted as single cells (192 samples).
SummaryWe report transcriptomes from 430 single glioblastoma cells isolated from 5 individual tumors and 102 single cells from gliomasphere cells lines generated using SMART-seq. In addition, we report population RNA-seq from the five tumors as well as RNA-seq from cell lines derived from 3 tumors (MGH26, MGH28, MGH31) cultured under serum free (GSC) and differentiated (DGC) conditions. This dataset highlights intratumoral heterogeneity with regards to the expression of de novo derived transcriptional modules and established subtype classifiers.
Dataset viewGSE57872
PMID24925914

Samples in glioblastoma [None]

Displaying 41-50 of 120 results.
SeriesSampleInstrumentOrganismTitleCell Source
GSE57872GSM1395685Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH28_H11glioblastoma [None]
GSE57872GSM1395688Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH29_A02glioblastoma [None]
GSE57872GSM1395691Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH29_A05glioblastoma [None]
GSE57872GSM1395692Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH29_A06glioblastoma [None]
GSE57872GSM1395696Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH29_A10glioblastoma [None]
GSE57872GSM1395697Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH29_A11glioblastoma [None]
GSE57872GSM1395702Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH29_B04glioblastoma [None]
GSE57872GSM1395706Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH29_B08glioblastoma [None]
GSE57872GSM1395711Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH29_C01glioblastoma [None]
GSE57872GSM1395714Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH29_C04glioblastoma [None]

Gene rank in glioblastoma [None]

Displaying 5871-5880 of 5942 results.
Rank orderGene SymbolEnsembl ID
5871COL14A1ENSG00000187955
5872PBKENSG00000168078
5873UBE2TENSG00000077152
5874KIF4AENSG00000090889
5875OR7E37PENSG00000215480
5876FANCBENSG00000181544
5877SLPIENSG00000124107
5878USP44ENSG00000136014
5879ACTA2ENSG00000107796
5880FGF9ENSG00000102678