Loading
scRNASeqDB
Home » Search by Cell » Cell View

Cell View

Cell Information

  glioblastoma [Mes]

Overall DesignOperative specimens from five glioblastoma patients (MGH26, MGH28, MGH29, MGH30, MGH31) were acutely dissociated, depleted for CD45+ inflammatory cells and then sorted as single cells (576 samples). Population controls for each tumor were isolated by sorting 2000-10000 cells and processed in parallel (5 population control samples). Single cells from two established cell lines, GBM6 and GBM8, were also sorted as single cells (192 samples).
SummaryWe report transcriptomes from 430 single glioblastoma cells isolated from 5 individual tumors and 102 single cells from gliomasphere cells lines generated using SMART-seq. In addition, we report population RNA-seq from the five tumors as well as RNA-seq from cell lines derived from 3 tumors (MGH26, MGH28, MGH31) cultured under serum free (GSC) and differentiated (DGC) conditions. This dataset highlights intratumoral heterogeneity with regards to the expression of de novo derived transcriptional modules and established subtype classifiers.
Dataset viewGSE57872
PMID24925914

Samples in glioblastoma [Mes]

Displaying 51-60 of 101 results.
SeriesSampleInstrumentOrganismTitleCell Source
GSE57872GSM1395679Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH28_H05glioblastoma [Mes]
GSE57872GSM1395680Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH28_H06glioblastoma [Mes]
GSE57872GSM1395681Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH28_H07glioblastoma [Mes]
GSE57872GSM1395683Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH28_H09glioblastoma [Mes]
GSE57872GSM1395684Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH28_H10glioblastoma [Mes]
GSE57872GSM1395690Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH29_A04glioblastoma [Mes]
GSE57872GSM1395701Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH29_B03glioblastoma [Mes]
GSE57872GSM1395707Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH29_B09glioblastoma [Mes]
GSE57872GSM1395720Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH29_C10glioblastoma [Mes]
GSE57872GSM1395721Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH29_C11glioblastoma [Mes]

Gene rank in glioblastoma [Mes]

Displaying 5761-5770 of 5942 results.
Rank orderGene SymbolEnsembl ID
5761NANPENSG00000170191
5762PGRMC2ENSG00000164040
5763ZNF33AENSG00000189180
5764SLNENSG00000170290
5765GRIK3ENSG00000163873
5766MTTPENSG00000138823
5767CLVS1ENSG00000177182
5768ZNF17ENSG00000186272
5769KLHDC8BENSG00000185909
5770MBPENSG00000197971