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  single H1-Fucci cell sorted from S phase of the cell cycle only

Overall DesignTotal 213 H1 single cells and 247 H1-Fucci single cells were sequenced. The 213 H1 cells were used to evaluate Oscope in identifying oscillatory genes. The H1-Fucci cells were used to confirm the cell cycle gene cluster identified by Oscope in the H1 hESCs. Normalized expected counts are provided in GSE64016_H1andFUCCI_normalized_EC.csv.gz
SummaryOscillatory gene expression is fundamental to mammalian development, but technologies to monitor expression oscillations are limited. We have developed a statistical approach called Oscope to identify and characterize the transcriptional dynamics of oscillating genes in single-cell RNA-seq data from an unsynchronized cell population. Applications to a number of data sets, include a single-cell RNA-seq data set of human embroyonic stem cells (hESCs), demonstrate advantages of the approach and also identify a potential artifact in the Fluidigm C1 platform.
Dataset viewGSE64016
PMID26301841

Samples in single H1-Fucci cell sorted from S phase of the cell cycle only

Displaying 71-80 of 80 results.
SeriesSampleInstrumentOrganismTitleCell Source
GSE64016GSM1562770Illumina HiSeq 2500Homo sapiensS_Exp1.072single H1-Fucci cell sorted from S phase of the cell cycle only
GSE64016GSM1562771Illumina HiSeq 2500Homo sapiensS_Exp1.073single H1-Fucci cell sorted from S phase of the cell cycle only
GSE64016GSM1562772Illumina HiSeq 2500Homo sapiensS_Exp1.074single H1-Fucci cell sorted from S phase of the cell cycle only
GSE64016GSM1562773Illumina HiSeq 2500Homo sapiensS_Exp1.075single H1-Fucci cell sorted from S phase of the cell cycle only
GSE64016GSM1562774Illumina HiSeq 2500Homo sapiensS_Exp1.076single H1-Fucci cell sorted from S phase of the cell cycle only
GSE64016GSM1562775Illumina HiSeq 2500Homo sapiensS_Exp1.077single H1-Fucci cell sorted from S phase of the cell cycle only
GSE64016GSM1562776Illumina HiSeq 2500Homo sapiensS_Exp1.078single H1-Fucci cell sorted from S phase of the cell cycle only
GSE64016GSM1562777Illumina HiSeq 2500Homo sapiensS_Exp1.079single H1-Fucci cell sorted from S phase of the cell cycle only
GSE64016GSM1562778Illumina HiSeq 2500Homo sapiensS_Exp1.080single H1-Fucci cell sorted from S phase of the cell cycle only
GSE64016GSM1562779Illumina HiSeq 2500Homo sapiensS_Exp1.081single H1-Fucci cell sorted from S phase of the cell cycle only

Gene rank in single H1-Fucci cell sorted from S phase of the cell cycle only

Displaying 17411-17420 of 17544 results.
Rank orderGene SymbolEnsembl ID
17411NEU2ENSG00000115488
17412FOXD4ENSG00000170122
17413HOXD9ENSG00000128709
17414SPANXB1ENSG00000227234
17415ACSM4ENSG00000215009
17416TRPM5ENSG00000070985
17417CYP1A1ENSG00000140465
17418SCGNENSG00000079689
17419CCR9ENSG00000173585
17420RLBP1ENSG00000140522