Loading
scRNASeqDB
Home » Search by Cell » Cell View

Cell View

Cell Information

  glioblastoma [None]

Overall DesignOperative specimens from five glioblastoma patients (MGH26, MGH28, MGH29, MGH30, MGH31) were acutely dissociated, depleted for CD45+ inflammatory cells and then sorted as single cells (576 samples). Population controls for each tumor were isolated by sorting 2000-10000 cells and processed in parallel (5 population control samples). Single cells from two established cell lines, GBM6 and GBM8, were also sorted as single cells (192 samples).
SummaryWe report transcriptomes from 430 single glioblastoma cells isolated from 5 individual tumors and 102 single cells from gliomasphere cells lines generated using SMART-seq. In addition, we report population RNA-seq from the five tumors as well as RNA-seq from cell lines derived from 3 tumors (MGH26, MGH28, MGH31) cultured under serum free (GSC) and differentiated (DGC) conditions. This dataset highlights intratumoral heterogeneity with regards to the expression of de novo derived transcriptional modules and established subtype classifiers.
Dataset viewGSE57872
PMID24925914

Samples in glioblastoma [None]

Displaying 81-90 of 120 results.
SeriesSampleInstrumentOrganismTitleCell Source
GSE57872GSM1395692Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH29_A06glioblastoma [None]
GSE57872GSM1395948Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH31_F10glioblastoma [None]
GSE57872GSM1395949Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH31_F11glioblastoma [None]
GSE57872GSM1395950Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH31_F12glioblastoma [None]
GSE57872GSM1395951Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH31_G01glioblastoma [None]
GSE57872GSM1395696Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH29_A10glioblastoma [None]
GSE57872GSM1395952Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH31_G02glioblastoma [None]
GSE57872GSM1395697Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH29_A11glioblastoma [None]
GSE57872GSM1395442Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH26_D08glioblastoma [None]
GSE57872GSM1395955Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH31_G05glioblastoma [None]

Gene rank in glioblastoma [None]

Displaying 5891-5900 of 5942 results.
Rank orderGene SymbolEnsembl ID
5891SLC17A8ENSG00000179520
5892MTL5
5893ERBB2ENSG00000141736
5894GOLGA6CENSG00000167195
5895LTB4RENSG00000213903
5896HSF5ENSG00000176160
5897C11orf65ENSG00000166323
5898PCGF6ENSG00000156374
5899PRSS35ENSG00000146250
5900TRPC5ENSG00000072315