scRNASeqDB - CellView Site

Overall Design	Total 213 H1 single cells and 247 H1-Fucci single cells were sequenced. The 213 H1 cells were used to evaluate Oscope in identifying oscillatory genes. The H1-Fucci cells were used to confirm the cell cycle gene cluster identified by Oscope in the H1 hESCs. Normalized expected counts are provided in GSE64016_H1andFUCCI_normalized_EC.csv.gz
Summary	Oscillatory gene expression is fundamental to mammalian development, but technologies to monitor expression oscillations are limited. We have developed a statistical approach called Oscope to identify and characterize the transcriptional dynamics of oscillating genes in single-cell RNA-seq data from an unsynchronized cell population. Applications to a number of data sets, include a single-cell RNA-seq data set of human embroyonic stem cells (hESCs), demonstrate advantages of the approach and also identify a potential artifact in the Fluidigm C1 platform.
Dataset view	GSE64016
PMID	26301841

Displaying 81-90 of 91 results.

Series	Sample	Instrument	Organism	Title	Cell Source
GSE64016	GSM1562691	Illumina HiSeq 2500	Homo sapiens	G1_Exp1.083	single H1-Fucci cell sorted from G1 phase of the cell cycle only
GSE64016	GSM1562692	Illumina HiSeq 2500	Homo sapiens	G1_Exp1.084	single H1-Fucci cell sorted from G1 phase of the cell cycle only
GSE64016	GSM1562693	Illumina HiSeq 2500	Homo sapiens	G1_Exp1.085	single H1-Fucci cell sorted from G1 phase of the cell cycle only
GSE64016	GSM1562694	Illumina HiSeq 2500	Homo sapiens	G1_Exp1.086	single H1-Fucci cell sorted from G1 phase of the cell cycle only
GSE64016	GSM1562695	Illumina HiSeq 2500	Homo sapiens	G1_Exp1.087	single H1-Fucci cell sorted from G1 phase of the cell cycle only
GSE64016	GSM1562696	Illumina HiSeq 2500	Homo sapiens	G1_Exp1.088	single H1-Fucci cell sorted from G1 phase of the cell cycle only
GSE64016	GSM1562697	Illumina HiSeq 2500	Homo sapiens	G1_Exp1.089	single H1-Fucci cell sorted from G1 phase of the cell cycle only
GSE64016	GSM1562698	Illumina HiSeq 2500	Homo sapiens	G1_Exp1.090	single H1-Fucci cell sorted from G1 phase of the cell cycle only
GSE64016	GSM1562699	Illumina HiSeq 2500	Homo sapiens	G1_Exp1.091	single H1-Fucci cell sorted from G1 phase of the cell cycle only
GSE64016	GSM1562600	Illumina HiSeq 2500	Homo sapiens	G1_Exp1.001	single H1-Fucci cell sorted from G1 phase of the cell cycle only

Displaying 17431-17440 of 17544 results.