Loading
scRNASeqDB
Home » Search by Cell » Cell View

Cell View

Cell Information

  glioblastoma [None]

Overall DesignOperative specimens from five glioblastoma patients (MGH26, MGH28, MGH29, MGH30, MGH31) were acutely dissociated, depleted for CD45+ inflammatory cells and then sorted as single cells (576 samples). Population controls for each tumor were isolated by sorting 2000-10000 cells and processed in parallel (5 population control samples). Single cells from two established cell lines, GBM6 and GBM8, were also sorted as single cells (192 samples).
SummaryWe report transcriptomes from 430 single glioblastoma cells isolated from 5 individual tumors and 102 single cells from gliomasphere cells lines generated using SMART-seq. In addition, we report population RNA-seq from the five tumors as well as RNA-seq from cell lines derived from 3 tumors (MGH26, MGH28, MGH31) cultured under serum free (GSC) and differentiated (DGC) conditions. This dataset highlights intratumoral heterogeneity with regards to the expression of de novo derived transcriptional modules and established subtype classifiers.
Dataset viewGSE57872
PMID24925914

Samples in glioblastoma [None]

Displaying 1-10 of 120 results.
SeriesSampleInstrumentOrganismTitleCell Source
GSE57872GSM1395416Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH26_B06glioblastoma [None]
GSE57872GSM1395420Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH26_B10glioblastoma [None]
GSE57872GSM1395442Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH26_D08glioblastoma [None]
GSE57872GSM1395444Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH26_D10glioblastoma [None]
GSE57872GSM1395448Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH26_E02glioblastoma [None]
GSE57872GSM1395452Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH26_E06glioblastoma [None]
GSE57872GSM1395453Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH26_E07glioblastoma [None]
GSE57872GSM1395471Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH26_G01glioblastoma [None]
GSE57872GSM1395472Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH26_G02glioblastoma [None]
GSE57872GSM1395481Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH26_G11glioblastoma [None]

Gene rank in glioblastoma [None]

Displaying 5781-5790 of 5942 results.
Rank orderGene SymbolEnsembl ID
5781RNF144BENSG00000137393
5782HMOX1ENSG00000100292
5783HIST1H1CENSG00000187837
5784GAL3ST4ENSG00000197093
5785THBS4ENSG00000113296
5786PELI2ENSG00000139946
5787HBEGFENSG00000113070
5788KBTBD7ENSG00000120696
5789CD83ENSG00000112149
5790FAM175AENSG00000163322