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  glioblastoma [Neu]

Overall DesignOperative specimens from five glioblastoma patients (MGH26, MGH28, MGH29, MGH30, MGH31) were acutely dissociated, depleted for CD45+ inflammatory cells and then sorted as single cells (576 samples). Population controls for each tumor were isolated by sorting 2000-10000 cells and processed in parallel (5 population control samples). Single cells from two established cell lines, GBM6 and GBM8, were also sorted as single cells (192 samples).
SummaryWe report transcriptomes from 430 single glioblastoma cells isolated from 5 individual tumors and 102 single cells from gliomasphere cells lines generated using SMART-seq. In addition, we report population RNA-seq from the five tumors as well as RNA-seq from cell lines derived from 3 tumors (MGH26, MGH28, MGH31) cultured under serum free (GSC) and differentiated (DGC) conditions. This dataset highlights intratumoral heterogeneity with regards to the expression of de novo derived transcriptional modules and established subtype classifiers.
Dataset viewGSE57872
PMID24925914

Samples in glioblastoma [Neu]

Displaying 1-10 of 24 results.
SeriesSampleInstrumentOrganismTitleCell Source
GSE57872GSM1395764Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH29_G06glioblastoma [Neu]
GSE57872GSM1395771Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH29_H01glioblastoma [Neu]
GSE57872GSM1395772Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH29_H02glioblastoma [Neu]
GSE57872GSM1395774Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH29_H04glioblastoma [Neu]
GSE57872GSM1395776Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH29_H06glioblastoma [Neu]
GSE57872GSM1395777Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH29_H07glioblastoma [Neu]
GSE57872GSM1395778Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH29_H08glioblastoma [Neu]
GSE57872GSM1395804Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH30_B10glioblastoma [Neu]
GSE57872GSM1395886Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH31_A08glioblastoma [Neu]
GSE57872GSM1395900Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH31_B10glioblastoma [Neu]

Gene rank in glioblastoma [Neu]

Displaying 5851-5860 of 5942 results.
Rank orderGene SymbolEnsembl ID
5851GLDNENSG00000186417
5852CECR1ENSG00000093072
5853PI3ENSG00000124102
5854MED24ENSG00000008838
5855CPNE8ENSG00000139117
5856IPO4ENSG00000196497
5857FGF9ENSG00000102678
5858TRDCENSG00000211829
5859GEMIN4ENSG00000179409
5860RPH3AENSG00000089169