Loading
scRNASeqDB
Home » Search by Cell » Cell View

Cell View

Cell Information

  glioblastoma [Pro+Cla]

Overall DesignOperative specimens from five glioblastoma patients (MGH26, MGH28, MGH29, MGH30, MGH31) were acutely dissociated, depleted for CD45+ inflammatory cells and then sorted as single cells (576 samples). Population controls for each tumor were isolated by sorting 2000-10000 cells and processed in parallel (5 population control samples). Single cells from two established cell lines, GBM6 and GBM8, were also sorted as single cells (192 samples).
SummaryWe report transcriptomes from 430 single glioblastoma cells isolated from 5 individual tumors and 102 single cells from gliomasphere cells lines generated using SMART-seq. In addition, we report population RNA-seq from the five tumors as well as RNA-seq from cell lines derived from 3 tumors (MGH26, MGH28, MGH31) cultured under serum free (GSC) and differentiated (DGC) conditions. This dataset highlights intratumoral heterogeneity with regards to the expression of de novo derived transcriptional modules and established subtype classifiers.
Dataset viewGSE57872
PMID24925914

Samples in glioblastoma [Pro+Cla]

Displaying 1-10 of 20 results.
SeriesSampleInstrumentOrganismTitleCell Source
GSE57872GSM1395508Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH26-2_B02glioblastoma [Pro+Cla]
GSE57872GSM1395511Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH26-2_B05glioblastoma [Pro+Cla]
GSE57872GSM1395516Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH26-2_B10glioblastoma [Pro+Cla]
GSE57872GSM1395531Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH26-2_D01glioblastoma [Pro+Cla]
GSE57872GSM1395807Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH30_C01glioblastoma [Pro+Cla]
GSE57872GSM1395564Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH26-2_F10glioblastoma [Pro+Cla]
GSE57872GSM1395825Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH30_D07glioblastoma [Pro+Cla]
GSE57872GSM1395835Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH30_E05glioblastoma [Pro+Cla]
GSE57872GSM1395581Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH26-2_H03glioblastoma [Pro+Cla]
GSE57872GSM1395854Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH30_F12glioblastoma [Pro+Cla]

Gene rank in glioblastoma [Pro+Cla]

Displaying 101-110 of 5942 results.
Rank orderGene SymbolEnsembl ID
101SNORA66ENSG00000207523
102FABP7ENSG00000164434
103S100BENSG00000160307
104GSTP1ENSG00000084207
105SRSF6ENSG00000124193
106MORC4ENSG00000133131
107MYL6ENSG00000092841
108SRSF3ENSG00000112081
109RBMXENSG00000147274
110XRCC5ENSG00000079246