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  hiPSC

Overall DesignRNAseq analysis of human induced pluripotent stem cells (hiPSC), incipient mesoderm-like cells (iMeLC) and primordial germ cell-like cells (BLIMP1-2A-tdTomato (BT)/TFAP2C-2A-ECFP (AG) expressing cells or EpCAM/CD49f (CSM) positive cells)
SummaryMechanisms underlying human germ cell development are unclear, partly due to difficulties in studying human embryos and lack of suitable experimental systems. Here, we show that human induced pluripotent stem cells (hiPSCs) differentiate into incipient mesoderm-like cells (iMeLCs), which robustly generate human primordial germ cell-like cells (hPGCLCs) that can be purified using the surface markers EpCAM and INTEGRINα6. The transcriptomes of hPGCLCs and primordial germ cells (PGCs) isolated from non-human primates are similar, and although specification of hPGCLCs and mouse PGCs rely on similar signaling pathways, hPGCLC specification transcriptionally activates germline fate without transiently inducing eminent somatic programs. This includes genes important for naive pluripotency and repression of key epigenetic modifiers, concomitant with epigenetic reprogramming. Accordingly, BLIMP1, which represses somatic programs in mice, activates and stabilizes a germline transcriptional circuit and represses a default neuronal differentiation program. Together, these findings provide a foundation for understanding and reconstituting human germ cell development in vitro.
Dataset viewGSE67259
PMID26189426

Samples in hiPSC

Displaying 1-10 of 11 results.
SeriesSampleInstrumentOrganismTitleCell Source
GSE67259GSM1643143AB 5500xl Genetic AnalyzerHomo sapienshiPSC#1hiPSC
GSE67259GSM1643144AB 5500xl Genetic AnalyzerHomo sapienshiPSC#2hiPSC
GSE67259GSM1643155AB 5500xl Genetic AnalyzerHomo sapienshiPSC*1hiPSC
GSE67259GSM1643156AB 5500xl Genetic AnalyzerHomo sapienshiPSC*2hiPSC
GSE67259GSM1643159AB 5500xl Genetic AnalyzerHomo sapiens585A1_hiPSC#1hiPSC
GSE67259GSM1643160AB 5500xl Genetic AnalyzerHomo sapiens585A1_hiPSC#2hiPSC
GSE67259GSM1643165AB 5500xl Genetic AnalyzerHomo sapiensiPSC_wt1hiPSC
GSE67259GSM1643166AB 5500xl Genetic AnalyzerHomo sapiensiPSC_wt2hiPSC
GSE67259GSM1643167AB 5500xl Genetic AnalyzerHomo sapiensiPSC_hethiPSC
GSE67259GSM1643168AB 5500xl Genetic AnalyzerHomo sapiensiPSC_ko1hiPSC

Gene rank in hiPSC

Displaying 151-160 of 20748 results.
Rank orderGene SymbolEnsembl ID
151PFN1ENSG00000108518
152TPI1ENSG00000111669
153SUMO2ENSG00000188612
154FAUENSG00000149806
155YWHABENSG00000166913
156EIF4BENSG00000063046
157SNHG5ENSG00000203875
158MTRNR2L8ENSG00000255823
159HNRNPA3ENSG00000170144
160SEPHS1ENSG00000086475