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  Primordial Germ Cells[female 4 week gestation]

Overall DesignIn total, we analyzed the transcriptomes of 233 individual male and female human PGCs from 15 embryos at between 4 and 19 weeks of gestation as well as 86 neighboring somatic cells from 13 of these embryos using a single-cell RNA-Seq method that we developed. Furthermore, we analyzed the DNA methylomes of both male and female human gonadal PGCs as well as the neighboring somatic cells of eleven of these embryos at between 7 and 19 weeks of gestation using whole-genome bisulfite sequencing (WGBS). In total, we generated 1.3 billion 100 bp paired-end reads for transcriptome analyses and 4.1 billion 100 bp or 150 bp paired-end reads for DNA methylome analyses.
SummaryGerm cells are vital for transmitting genetic information from one generation to the next and for maintaining the continuation of species. Here, we analyze the transcriptome of human primordial germ cells (PGCs) from the migrating stage to the gonadal stage at single-cell and single-base resolutions. Human PGCs show unique transcription patterns involving the simultaneous expression of both pluripotency genes and germline-specific genes, with a subset of them displaying developmental stage-specific features. Furthermore, we analyze the DNA methylome of human PGCs and find global demethylation of their genomes. Approximately 10-11 weeks after gestation, the PGCs are nearly devoid of any DNA methylation; with only 7.8% and 6.0% of the median methylation levels in male and female PGCs, respectively. Our work paves the way toward deciphering the complex epigenetic reprogramming of the germline with the aim of restoring totipotency in fertilized oocytes.
Dataset viewGSE63818
PMID26046443

Samples in Primordial Germ Cells[female 4 week gestation]

Displaying 1-10 of 12 results.
SeriesSampleInstrumentOrganismTitleCell Source
GSE63818GSM1677622Illumina HiSeq 2500Homo sapiensF_PGC_4W_embryo1_sc1Primordial Germ Cells[female 4 week gestation]
GSE63818GSM1677623Illumina HiSeq 2500Homo sapiensF_PGC_4W_embryo1_sc2Primordial Germ Cells[female 4 week gestation]
GSE63818GSM1677624Illumina HiSeq 2500Homo sapiensF_PGC_4W_embryo2_sc1Primordial Germ Cells[female 4 week gestation]
GSE63818GSM1677625Illumina HiSeq 2500Homo sapiensF_PGC_4W_embryo2_sc2Primordial Germ Cells[female 4 week gestation]
GSE63818GSM1677626Illumina HiSeq 2500Homo sapiensF_PGC_4W_embryo2_sc3Primordial Germ Cells[female 4 week gestation]
GSE63818GSM1677627Illumina HiSeq 2500Homo sapiensF_PGC_4W_embryo2_sc4Primordial Germ Cells[female 4 week gestation]
GSE63818GSM1677628Illumina HiSeq 2500Homo sapiensF_PGC_4W_embryo2_sc5Primordial Germ Cells[female 4 week gestation]
GSE63818GSM1677629Illumina HiSeq 2500Homo sapiensF_PGC_4W_embryo2_sc6Primordial Germ Cells[female 4 week gestation]
GSE63818GSM1677630Illumina HiSeq 2500Homo sapiensF_PGC_4W_embryo2_sc7Primordial Germ Cells[female 4 week gestation]
GSE63818GSM1677631Illumina HiSeq 2500Homo sapiensF_PGC_4W_embryo2_sc8Primordial Germ Cells[female 4 week gestation]

Gene rank in Primordial Germ Cells[female 4 week gestation]

Displaying 1-10 of 21483 results.
Rank orderGene SymbolEnsembl ID
1EEF1A1ENSG00000156508
2RPS6ENSG00000137154
3RPLP0ENSG00000089157
4RPL7ENSG00000147604
5RPS4XENSG00000198034
6RPSAENSG00000168028
7RPL4ENSG00000174444
8EEF1GENSG00000254772
9GNB2L1
10RPL6ENSG00000089009