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  hiPSC

Overall DesignRNAseq analysis of human induced pluripotent stem cells (hiPSC), incipient mesoderm-like cells (iMeLC) and primordial germ cell-like cells (BLIMP1-2A-tdTomato (BT)/TFAP2C-2A-ECFP (AG) expressing cells or EpCAM/CD49f (CSM) positive cells)
SummaryMechanisms underlying human germ cell development are unclear, partly due to difficulties in studying human embryos and lack of suitable experimental systems. Here, we show that human induced pluripotent stem cells (hiPSCs) differentiate into incipient mesoderm-like cells (iMeLCs), which robustly generate human primordial germ cell-like cells (hPGCLCs) that can be purified using the surface markers EpCAM and INTEGRINα6. The transcriptomes of hPGCLCs and primordial germ cells (PGCs) isolated from non-human primates are similar, and although specification of hPGCLCs and mouse PGCs rely on similar signaling pathways, hPGCLC specification transcriptionally activates germline fate without transiently inducing eminent somatic programs. This includes genes important for naive pluripotency and repression of key epigenetic modifiers, concomitant with epigenetic reprogramming. Accordingly, BLIMP1, which represses somatic programs in mice, activates and stabilizes a germline transcriptional circuit and represses a default neuronal differentiation program. Together, these findings provide a foundation for understanding and reconstituting human germ cell development in vitro.
Dataset viewGSE67259
PMID26189426

Samples in hiPSC

Displaying 1-10 of 11 results.
SeriesSampleInstrumentOrganismTitleCell Source
GSE67259GSM1643143AB 5500xl Genetic AnalyzerHomo sapienshiPSC#1hiPSC
GSE67259GSM1643144AB 5500xl Genetic AnalyzerHomo sapienshiPSC#2hiPSC
GSE67259GSM1643155AB 5500xl Genetic AnalyzerHomo sapienshiPSC*1hiPSC
GSE67259GSM1643156AB 5500xl Genetic AnalyzerHomo sapienshiPSC*2hiPSC
GSE67259GSM1643159AB 5500xl Genetic AnalyzerHomo sapiens585A1_hiPSC#1hiPSC
GSE67259GSM1643160AB 5500xl Genetic AnalyzerHomo sapiens585A1_hiPSC#2hiPSC
GSE67259GSM1643165AB 5500xl Genetic AnalyzerHomo sapiensiPSC_wt1hiPSC
GSE67259GSM1643166AB 5500xl Genetic AnalyzerHomo sapiensiPSC_wt2hiPSC
GSE67259GSM1643167AB 5500xl Genetic AnalyzerHomo sapiensiPSC_hethiPSC
GSE67259GSM1643168AB 5500xl Genetic AnalyzerHomo sapiensiPSC_ko1hiPSC

Gene rank in hiPSC

Displaying 1-10 of 20748 results.
Rank orderGene SymbolEnsembl ID
1EEF1A1ENSG00000156508
2RPLP0ENSG00000089157
3RPS27AENSG00000143947
4LOC100505829
5GAPDHENSG00000111640
6RPS12ENSG00000112306
7RPS24ENSG00000138326
8RPS3AENSG00000145425
9RPL7AENSG00000148303
10RPS23ENSG00000186468