gene,0,0 GSM967508,0,534.396 GSM967509,0,589.902 GSM967510,0,541.763 GSM967511,0,569.178 GSM967512,0,472.773 GSM967513,0,397.418 GSM967514,0,367.331 GSM967515,0,420.739 GSM967516,0,92.231 GSM967517,0,72.107 GSM967518,0,74.665 GSM967519,0,41.01 GSM967520,0,92.372 GSM967521,0,81.517 GSM967535,0,175.309 GSM967536,0,190.137 GSM967537,0,205.157 GSM967538,0,425.765 GSM967539,0,288.368 GSM967540,0,196.215 GSM967541,0,413.753 GSM967542,0,63.516 GSM967543,0,335.924 GSM967544,0,325.967 GSM967545,0,222.648 GSM967546,0,251.795 GSM967547,0,198.003 GSM967548,0,82.463 GSM967549,0,213.175 GSM967550,0,160.877 GSM967551,0,412.574 GSM967552,0,133.146 GSM967553,0,354.081 GSM967554,0,281.309 GSM967555,0,235.297 GSM967556,0,161.629 GSM967557,0,183.172
| Synonyms | HMG-1;HMG1;HMG3;SBP-1 |
| Description | high mobility group box 1 |
|---|---|
| Chromosome | 13q12 |
| Database Reference | MIM:163905 HGNC:4983 HPRD:01228 Vega:OTTHUMG00000016670 |
| See related | THE HUMAN PROTEIN ATLAS |
| Dataset | GSE38495 |
| HMGB1 expression in each cell group | Minimum Value (TPM) | Median Value (TPM) | Maximum Value (TPM) |
|---|---|---|---|
| Embryonic stem cell | 367.331 | 503.584 | 589.902 |
| LNCaP cell | 41.01 | 78.091 | 92.372 |
| NG2-sorted cell from blood | 175.309 | 200.686 | 425.765 |
| PC3 cell | 63.516 | 330.945 | 413.753 |
| Primary melanocyte | 222.648 | 237.222 | 251.795 |
| SKMEL5 cell | 82.463 | 179.44 | 213.175 |
| T24 cell | 133.146 | 317.695 | 412.574 |
| UACC257 cell | 161.629 | 183.172 | 235.297 |
| Comparing HMGB1 expression between groups | FDR |
|---|---|
| Embryonic stem cell VS LNCaP cell | 2.49834268757121e-06 |
| Embryonic stem cell VS NG2-sorted cell from blood | 0.0168031967585418 |
| Embryonic stem cell VS PC3 cell | NS |
| Embryonic stem cell VS Primary melanocyte | 0.0410398617312897 |
| Embryonic stem cell VS SKMEL5 cell | 0.00232268490086848 |
| Embryonic stem cell VS T24 cell | NS |
| Embryonic stem cell VS UACC257 cell | 0.00603823688437122 |
| LNCaP cell VS NG2-sorted cell from blood | 0.00533051699760128 |
| LNCaP cell VS PC3 cell | 0.0259038275865759 |
| LNCaP cell VS Primary melanocyte | 0.044430486396983 |
| LNCaP cell VS SKMEL5 cell | NS |
| LNCaP cell VS T24 cell | 0.0078692943538326 |
| LNCaP cell VS UACC257 cell | 0.029250761719085 |
| NG2-sorted cell from blood VS PC3 cell | NS |
| NG2-sorted cell from blood VS Primary melanocyte | NS |
| NG2-sorted cell from blood VS SKMEL5 cell | NS |
| NG2-sorted cell from blood VS T24 cell | NS |
| NG2-sorted cell from blood VS UACC257 cell | NS |
| PC3 cell VS Primary melanocyte | NS |
| PC3 cell VS SKMEL5 cell | NS |
Top correlated genes were calculated by using Spearman rank correlation. Enrichment analysis can be performed on DAVID server using its API, while alternative links are also provided.
KEGG GO Others Embryonic stem cell[8]
LNCaP cell[6]
NG2-sorted cell from blood[6]
PC3 cell[4]
Primary melanocyte[2]
SKMEL5 cell[4]
T24 cell[4]
UACC257 cell[3]
