gene,0,0 GSM967508,0,0.056 GSM967509,0,0 GSM967510,0,0 GSM967511,0,0 GSM967512,0,0.055 GSM967513,0,0.062 GSM967514,0,0 GSM967515,0,0.064 GSM967516,0,240.544 GSM967517,0,140.045 GSM967518,0,285.018 GSM967519,0,124.062 GSM967520,0,185.132 GSM967521,0,87.955 GSM967535,0,150.978 GSM967536,0,847.538 GSM967537,0,668.272 GSM967538,0,446.066 GSM967539,0,532.104 GSM967540,0,306.889 GSM967541,0,74.806 GSM967542,0,79.057 GSM967543,0,147.605 GSM967544,0,35.787 GSM967545,0,0 GSM967546,0,0 GSM967547,0,245.828 GSM967548,0,378.88 GSM967549,0,427.828 GSM967550,0,361.09 GSM967551,0,0 GSM967552,0,0 GSM967553,0,0 GSM967554,0,0.047 GSM967555,0,281.559 GSM967556,0,430.685 GSM967557,0,510.004
| Synonyms | CT130;MAPE;OIP-4;OIP4 |
| Description | preferentially expressed antigen in melanoma |
|---|---|
| Chromosome | 22q11.22 |
| Database Reference | MIM:606021 HGNC:9336 HPRD:05820 Vega:OTTHUMG00000151172 |
| See related | THE HUMAN PROTEIN ATLAS |
| Dataset | GSE38495 |
| PRAME expression in each cell group | Minimum Value (TPM) | Median Value (TPM) | Maximum Value (TPM) |
|---|---|---|---|
| Embryonic stem cell | 0 | 0.027 | 0.064 |
| LNCaP cell | 87.955 | 162.588 | 285.018 |
| NG2-sorted cell from blood | 150.978 | 489.085 | 847.538 |
| PC3 cell | 35.787 | 76.932 | 147.605 |
| Primary melanocyte | 0 | 0 | 0 |
| SKMEL5 cell | 245.828 | 369.985 | 427.828 |
| T24 cell | 0 | 0 | 0.047 |
| UACC257 cell | 281.559 | 430.685 | 510.004 |
| Comparing PRAME expression between groups | FDR |
|---|---|
| Embryonic stem cell VS LNCaP cell | 6.85427975847603e-07 |
| Embryonic stem cell VS NG2-sorted cell from blood | 6.0583769644899e-07 |
| Embryonic stem cell VS PC3 cell | 8.95258994662809e-05 |
| Embryonic stem cell VS Primary melanocyte | NS |
| Embryonic stem cell VS SKMEL5 cell | 2.18516308374824e-05 |
| Embryonic stem cell VS T24 cell | NS |
| Embryonic stem cell VS UACC257 cell | 0.000168715954893241 |
| LNCaP cell VS NG2-sorted cell from blood | 0.0471561455518825 |
| LNCaP cell VS PC3 cell | NS |
| LNCaP cell VS Primary melanocyte | NS |
| LNCaP cell VS SKMEL5 cell | NS |
| LNCaP cell VS T24 cell | NS |
| LNCaP cell VS UACC257 cell | NS |
| NG2-sorted cell from blood VS PC3 cell | 0.0252022719925981 |
| NG2-sorted cell from blood VS Primary melanocyte | NS |
| NG2-sorted cell from blood VS SKMEL5 cell | NS |
| NG2-sorted cell from blood VS T24 cell | NS |
| NG2-sorted cell from blood VS UACC257 cell | NS |
| PC3 cell VS Primary melanocyte | NS |
| PC3 cell VS SKMEL5 cell | NS |
Top correlated genes were calculated by using Spearman rank correlation. Enrichment analysis can be performed on DAVID server using its API, while alternative links are also provided.
KEGG GO Others Embryonic stem cell[8]
LNCaP cell[6]
NG2-sorted cell from blood[6]
PC3 cell[4]
Primary melanocyte[2]
SKMEL5 cell[4]
T24 cell[4]
UACC257 cell[3]
