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General Information

SMARCA4[ENSG00000127616]

SynonymsBAF190;BAF190A;BRG1;CSS4;MRD16;RTPS2;SNF2;SNF2L4;SNF2LB;SWI2;hSNF2b
DescriptionSWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
Chromosome19p13.2
Database ReferenceMIM:603254 HGNC:11100 HPRD:04459 Vega:OTTHUMG00000169272 
See relatedTHE HUMAN PROTEIN ATLAS
DatasetGSE75140

Gene Rank

Created with Highcharts 4.2.5RankRank of SMARCA4 Expression in GSE75140fetal human cortex 2[13 weeks post-conception]fetal human cortex 1[12 weeks post-conception]iPSC 409B2[58 days]iPSC 409B2[33 days]iPSC 409B2[35 days]ESC H9[53 days]iPSC 409B2[65 days]iPSC 409B2[37 days]iPSC 409B2[41 days]0102030405060708090100

Gene Expression

Created with Highcharts 4.2.5

 

Displaying 1-9 of 9 results.
SMARCA4 expression in each cell groupMinimum Value (TPM)Median Value (TPM)Maximum Value (TPM)
ESC H9[53 days]0172.9021,057.826
fetal human cortex 1[12 weeks post-conception]0307.747978.886
fetal human cortex 2[13 weeks post-conception]0362.695962.801
iPSC 409B2[33 days]0229.981540.738
iPSC 409B2[35 days]0228.339453.292
iPSC 409B2[37 days]0184.44561.55
iPSC 409B2[41 days]098.122742.647
iPSC 409B2[58 days]0269.1961,092.237
iPSC 409B2[65 days]0142.3651,107.527
Created with Highcharts 4.2.5Cell GroupGene Expression Level (TPM)SMARCA4 Expression in Each Cell GroupESC H9[53 days]fetal human cortex1[12 weeks post-conception]fetal human cortex 1[12 weeks post-conception]fetal human cortex2[13 weeks post-conception]fetal human cortex 2[13 weeks post-conception]iPSC 409B2[33 days]iPSC 409B2[35 days]iPSC 409B2[37 days]iPSC 409B2[41 days]iPSC 409B2[58 days]iPSC 409B2[65 days]-250025050075010001250
Displaying 1-20 of 36 results.
Comparing SMARCA4 expression between groupsFDR
ESC H9[53 days] VS fetal human cortex 1[12 weeks post-conception]0.00461641714185454
ESC H9[53 days] VS fetal human cortex 2[13 weeks post-conception]0.00986434583557824
ESC H9[53 days] VS iPSC 409B2[33 days]NS
ESC H9[53 days] VS iPSC 409B2[35 days]NS
ESC H9[53 days] VS iPSC 409B2[37 days]NS
ESC H9[53 days] VS iPSC 409B2[41 days]NS
ESC H9[53 days] VS iPSC 409B2[58 days]NS
ESC H9[53 days] VS iPSC 409B2[65 days]NS
fetal human cortex 1[12 weeks post-conception] VS fetal human cortex 2[13 weeks post-conception]NS
fetal human cortex 1[12 weeks post-conception] VS iPSC 409B2[33 days]NS
fetal human cortex 1[12 weeks post-conception] VS iPSC 409B2[35 days]0.0184378123608446
fetal human cortex 1[12 weeks post-conception] VS iPSC 409B2[37 days]0.00256489865787946
fetal human cortex 1[12 weeks post-conception] VS iPSC 409B2[41 days]5.21890510650094e-06
fetal human cortex 1[12 weeks post-conception] VS iPSC 409B2[58 days]NS
fetal human cortex 1[12 weeks post-conception] VS iPSC 409B2[65 days]0.01867850857866
fetal human cortex 2[13 weeks post-conception] VS iPSC 409B2[33 days]NS
fetal human cortex 2[13 weeks post-conception] VS iPSC 409B2[35 days]0.00204696927177211
fetal human cortex 2[13 weeks post-conception] VS iPSC 409B2[37 days]0.000872457616506984
fetal human cortex 2[13 weeks post-conception] VS iPSC 409B2[41 days]0.000130889137847604
fetal human cortex 2[13 weeks post-conception] VS iPSC 409B2[58 days]NS
NS represents no significant differential expression between two groups was detected by using the BPSC method.

Top 100 positive and negative correlated genes for SMARCA4

Top correlated genes were calculated by using Spearman rank correlation. Enrichment analysis can be performed on DAVID server using its API, while alternative links are also provided.

KEGG GO Others   

 ESC H9[53 days][96]
 fetal human cortex 1[12 weeks post-conception][164]
 fetal human cortex 2[13 weeks post-conception][62]
 iPSC 409B2[33 days][40]
 iPSC 409B2[35 days][68]
 iPSC 409B2[37 days][71]
 iPSC 409B2[41 days][74]
 iPSC 409B2[58 days][79]
 iPSC 409B2[65 days][80]