gene,0,0 GSM1643170,0,62.317 GSM1643171,0,71.041 GSM1643147,0,75.043 GSM1643148,0,92.123 GSM1643172,0,67.518 GSM1643173,0,88.157 GSM1643174,0,65.515 GSM1643175,0,66.283 GSM1643176,0,87.341 GSM1643149,0,82.417 GSM1643150,0,101.383 GSM1643177,0,67.301 GSM1643178,0,75.577 GSM1643179,0,64.04 GSM1643151,0,66.654 GSM1643152,0,90.838 GSM1643157,0,60.739 GSM1643158,0,55.563 GSM1643163,0,49.173 GSM1643164,0,60.664 GSM1643153,0,67.923 GSM1643154,0,95.207 GSM1643143,0,60.917 GSM1643144,0,51.57 GSM1643155,0,65.464 GSM1643156,0,62.709 GSM1643159,0,57.289 GSM1643160,0,51.898 GSM1643165,0,60.174 GSM1643166,0,64.163 GSM1643167,0,44.262 GSM1643168,0,60.106 GSM1643169,0,70.359 GSM1643145,0,49.572 GSM1643146,0,58.908 GSM1643161,0,80.566 GSM1643162,0,51.231
| Synonyms | 61E3.4;ATX;LIP |
| Description | SMG1, nonsense mediated mRNA decay associated PI3K related kinase |
|---|---|
| Chromosome | 16p12.3 |
| Database Reference | MIM:607032 HGNC:30045 HPRD:06123 Vega:OTTHUMG00000166900 |
| See related | THE HUMAN PROTEIN ATLAS |
| Dataset | GSE67259 |
| SMG1 expression in each cell group | Minimum Value (TPM) | Median Value (TPM) | Maximum Value (TPM) |
|---|---|---|---|
| d2 AG+ cells | 62.317 | 66.679 | 71.041 |
| d2 BTAG+ cells | 65.515 | 75.043 | 92.123 |
| d4 AG+ cells | 66.283 | 76.812 | 87.341 |
| d4 BTAG+ cells | 64.04 | 75.577 | 101.383 |
| d6 BTAG+ cells | 55.563 | 63.697 | 90.838 |
| d6 CSM+ cells | 49.173 | 54.918 | 60.664 |
| d8 BTAG+ cells | 67.923 | 81.565 | 95.207 |
| hiPSC | 44.262 | 60.174 | 70.359 |
| iMeLC | 49.572 | 55.07 | 80.566 |
| Comparing SMG1 expression between groups | FDR |
|---|---|
| d2 AG+ cells VS d2 BTAG+ cells | NS |
| d2 AG+ cells VS d4 AG+ cells | NS |
| d2 AG+ cells VS d4 BTAG+ cells | NS |
| d2 AG+ cells VS d6 BTAG+ cells | NS |
| d2 AG+ cells VS d6 CSM+ cells | NS |
| d2 AG+ cells VS d8 BTAG+ cells | NS |
| d2 AG+ cells VS hiPSC | 0.000531337766650174 |
| d2 AG+ cells VS iMeLC | NS |
| d2 BTAG+ cells VS d4 AG+ cells | NS |
| d2 BTAG+ cells VS d4 BTAG+ cells | NS |
| d2 BTAG+ cells VS d6 BTAG+ cells | NS |
| d2 BTAG+ cells VS d6 CSM+ cells | NS |
| d2 BTAG+ cells VS d8 BTAG+ cells | NS |
| d2 BTAG+ cells VS hiPSC | 3.87623952858528e-06 |
| d2 BTAG+ cells VS iMeLC | 0.0069653819489549 |
| d4 AG+ cells VS d4 BTAG+ cells | NS |
| d4 AG+ cells VS d6 BTAG+ cells | NS |
| d4 AG+ cells VS d6 CSM+ cells | NS |
| d4 AG+ cells VS d8 BTAG+ cells | NS |
| d4 AG+ cells VS hiPSC | 0.00169934802789154 |
Top correlated genes were calculated by using Spearman rank correlation. Enrichment analysis can be performed on DAVID server using its API, while alternative links are also provided.
KEGG GO Others d2 AG+ cells[2]
d2 BTAG+ cells[5]
d4 AG+ cells[2]
d4 BTAG+ cells[5]
d6 BTAG+ cells[4]
d6 CSM+ cells[2]
d8 BTAG+ cells[2]
hiPSC[11]
iMeLC[4]
