gene,0,0 GSM967508,0,0.004 GSM967509,0,0.004 GSM967510,0,0.008 GSM967511,0,0 GSM967512,0,0.009 GSM967513,0,0.01 GSM967514,0,0 GSM967515,0,0.015 GSM967516,0,0.019 GSM967517,0,0.011 GSM967518,0,0.028 GSM967519,0,0.026 GSM967520,0,0.007 GSM967521,0,0.04 GSM967535,0,0.033 GSM967536,0,1.726 GSM967537,0,2.311 GSM967538,0,0.014 GSM967539,0,0 GSM967540,0,1.219 GSM967541,0,0.046 GSM967542,0,113.448 GSM967543,0,3.196 GSM967544,0,0.029 GSM967545,0,8.056 GSM967546,0,6.806 GSM967547,0,3.127 GSM967548,0,3.647 GSM967549,0,4.978 GSM967550,0,2.51 GSM967551,0,7.944 GSM967552,0,0.678 GSM967553,0,2.968 GSM967554,0,6.07 GSM967555,0,0.564 GSM967556,0,0.016 GSM967557,0,6.53
| Synonyms | 8B;ARCA1;C6orf98;CPG2;EDMD4;MYNE1;Nesp1;SCAR8;dJ45H2.2 |
| Description | spectrin repeat containing nuclear envelope protein 1 |
|---|---|
| Chromosome | 6q25 |
| Database Reference | MIM:608441 HGNC:17089 HPRD:09762 Vega:OTTHUMG00000015841 |
| See related | THE HUMAN PROTEIN ATLAS |
| Dataset | GSE38495 |
| SYNE1 expression in each cell group | Minimum Value (TPM) | Median Value (TPM) | Maximum Value (TPM) |
|---|---|---|---|
| Embryonic stem cell | 0 | 0.006 | 0.015 |
| LNCaP cell | 0.007 | 0.022 | 0.04 |
| NG2-sorted cell from blood | 0 | 0.626 | 2.311 |
| PC3 cell | 0.029 | 1.621 | 113.448 |
| Primary melanocyte | 6.806 | 7.431 | 8.056 |
| SKMEL5 cell | 2.51 | 3.387 | 4.978 |
| T24 cell | 0.678 | 4.519 | 7.944 |
| UACC257 cell | 0.016 | 0.564 | 6.53 |
| Comparing SYNE1 expression between groups | FDR |
|---|---|
| Embryonic stem cell VS LNCaP cell | 0.0495780118537219 |
| Embryonic stem cell VS NG2-sorted cell from blood | 0.000228586525734556 |
| Embryonic stem cell VS PC3 cell | NS |
| Embryonic stem cell VS Primary melanocyte | 0.00225195766277759 |
| Embryonic stem cell VS SKMEL5 cell | 3.73748048868515e-05 |
| Embryonic stem cell VS T24 cell | 0.000109274235516291 |
| Embryonic stem cell VS UACC257 cell | 0.00280233283040549 |
| LNCaP cell VS NG2-sorted cell from blood | 0.00352837905799429 |
| LNCaP cell VS PC3 cell | 0.00380082800973728 |
| LNCaP cell VS Primary melanocyte | 0.00497078777153331 |
| LNCaP cell VS SKMEL5 cell | 0.000106272874299829 |
| LNCaP cell VS T24 cell | 0.000299872764400228 |
| LNCaP cell VS UACC257 cell | 0.0183814003169538 |
| NG2-sorted cell from blood VS PC3 cell | NS |
| NG2-sorted cell from blood VS Primary melanocyte | NS |
| NG2-sorted cell from blood VS SKMEL5 cell | NS |
| NG2-sorted cell from blood VS T24 cell | NS |
| NG2-sorted cell from blood VS UACC257 cell | NS |
| PC3 cell VS Primary melanocyte | NS |
| PC3 cell VS SKMEL5 cell | NS |
Top correlated genes were calculated by using Spearman rank correlation. Enrichment analysis can be performed on DAVID server using its API, while alternative links are also provided.
KEGG GO Others Embryonic stem cell[8]
LNCaP cell[6]
NG2-sorted cell from blood[6]
PC3 cell[4]
Primary melanocyte[2]
SKMEL5 cell[4]
T24 cell[4]
UACC257 cell[3]
