gene,0,0 GSM967508,0,0 GSM967509,0,0 GSM967510,0,0 GSM967511,0,0 GSM967512,0,0 GSM967513,0,0 GSM967514,0,0 GSM967515,0,0 GSM967516,0,0 GSM967517,0,0 GSM967518,0,0.024 GSM967519,0,0.013 GSM967520,0,0.01 GSM967521,0,0.045 GSM967535,0,0 GSM967536,0,0 GSM967537,0,1.435 GSM967538,0,5.22 GSM967539,0,0 GSM967540,0,0 GSM967541,0,0.017 GSM967542,0,0 GSM967543,0,0.024 GSM967544,0,0.018 GSM967545,0,0 GSM967546,0,0 GSM967547,0,0 GSM967548,0,0 GSM967549,0,1.923 GSM967550,0,0 GSM967551,0,0.02 GSM967552,0,0.015 GSM967553,0,0.035 GSM967554,0,0.021 GSM967555,0,0 GSM967556,0,0 GSM967557,0,0
| Synonyms | RP39;US2;USH2;dJ1111A8.1 |
| Description | usherin |
|---|---|
| Chromosome | 1q41 |
| Database Reference | MIM:608400 HGNC:12601 HPRD:02042 HPRD:09759 Vega:OTTHUMG00000037079 |
| See related | THE HUMAN PROTEIN ATLAS |
| Dataset | GSE38495 |
| USH2A expression in each cell group | Minimum Value (TPM) | Median Value (TPM) | Maximum Value (TPM) |
|---|---|---|---|
| Embryonic stem cell | 0 | 0 | 0 |
| LNCaP cell | 0 | 0.012 | 0.045 |
| NG2-sorted cell from blood | 0 | 0 | 5.22 |
| PC3 cell | 0 | 0.017 | 0.024 |
| Primary melanocyte | 0 | 0 | 0 |
| SKMEL5 cell | 0 | 0 | 1.923 |
| T24 cell | 0.015 | 0.02 | 0.035 |
| UACC257 cell | 0 | 0 | 0 |
| Comparing USH2A expression between groups | FDR |
|---|---|
| PC3 cell VS T24 cell | NS |
| PC3 cell VS UACC257 cell | NS |
| Primary melanocyte VS SKMEL5 cell | NS |
| Primary melanocyte VS T24 cell | NS |
| Primary melanocyte VS UACC257 cell | NS |
| SKMEL5 cell VS T24 cell | NS |
| SKMEL5 cell VS UACC257 cell | NS |
| T24 cell VS UACC257 cell | NS |
Top correlated genes were calculated by using Spearman rank correlation. Enrichment analysis can be performed on DAVID server using its API, while alternative links are also provided.
KEGG GO Others Embryonic stem cell[8]
LNCaP cell[6]
NG2-sorted cell from blood[6]
PC3 cell[4]
Primary melanocyte[2]
SKMEL5 cell[4]
T24 cell[4]
UACC257 cell[3]
