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Cell Information

  CAF

Overall DesignTumors were disaggregated, sorted into single cells, and profiled by Smart-seq2.
SummaryTo understand the diversity of expression states within melanoma tumors, we obtained freshly resected samples, dissagregated the samples, sorted into single cells and profiled them by single-cell RNA-seq.
Dataset viewGSE72056
PMID27124452

Samples in CAF

Displaying 31-39 of 39 results.
SeriesSampleInstrumentOrganismTitleCell Source
GSE72056GSM1851641Illumina NextSeq 500Homo sapienscy80-CD45-neg-D12-S912-combCAF
GSE72056GSM1853003Illumina NextSeq 500Homo sapiensCY80-neg-C11-S35-combCAF
GSE72056GSM1853020Illumina NextSeq 500Homo sapiensCY80-neg-G06-S78-combCAF
GSE72056GSM1852219Illumina NextSeq 500Homo sapienscy82-CD45-neg-1-B09-S213-combCAF
GSE72056GSM1852053Illumina NextSeq 500Homo sapienscy82-CD45-neg-2-E02-S242-combCAF
GSE72056GSM1852508Illumina NextSeq 500Homo sapienscy82-CD45-neg-3-C08-S800-combCAF
GSE72056GSM1851792Illumina NextSeq 500Homo sapienscy82-CD45-pos-1-C12-S516-combCAF
GSE72056GSM1851831Illumina NextSeq 500Homo sapienscy82-CD45-pos-1-D06-S522-combCAF
GSE72056GSM1853110Illumina NextSeq 500Homo sapienscy84-Primary-CD45-neg-G03-S1035-combCAF

Gene rank in CAF

Displaying 1-10 of 22503 results.
Rank orderGene SymbolEnsembl ID
1MTRNR2L2ENSG00000271043
2MTRNR2L8ENSG00000255823
3ACTBENSG00000075624
4TMSB4XENSG00000205542
5FTLENSG00000087086
6RPL41ENSG00000229117
7MTRNR2L1ENSG00000256618
8VIMENSG00000026025
9EEF1A1ENSG00000156508
10RPS18ENSG00000096150