Loading

Cell View

Cell Information

  cultured embryonic stem cells[DCX-][12]

Overall DesignThe transcriptomes of 2684 single cells were profiled by CelSeq at different timepoints throughout a 54-day differentiation protocol that converted H1 human embryonic stem cells to a variety of brain cell types.
SummaryDuring development of the human brain, multiple cell types with diverse regional identities are generated. Here we report a system to generate early human brain forebrain and mid/hindbrain cell types from human embryonic stem cells (hESCs), and infer and experimentally confirm a lineage tree for the generation of these types based on single-cell RNA-Seq analysis. We engineered SOX2Cit/+ and DCXCit/Y hESC lines to target progenitors and neurons throughout neural differentiation for single-cell transcriptomic profiling, then identified discrete cell types consisting of both rostral (cortical) and caudal (mid/hindbrain) identities. Direct comparison of the cell types were made to primary tissues using gene expression atlases and fetal human brain single-cell gene expression data, and this established that the cell types resembled early human brain cell types, including preplate cells. From the single-cell transcriptomic data a Bayesian algorithm generated a unified lineage tree, and predicted novel regulatory transcription factors. The lineage tree highlighted a prominent bifurcation between cortical and mid/hindbrain cell types, confirmed by clonal analysis experiments. We demonstrated that cell types from either branch could preferentially generated by manipulation of the canonical Wnt/beta-catenin pathway. In summary, we present an experimentally validated lineage tree that encompasses multiple brain regions, and our work sheds light on the molecular regulation of region-specific neural lineages during human brain development.
Dataset viewGSE86977
PMIDNA

Samples in cultured embryonic stem cells[DCX-][12]

Displaying 31-40 of 241 results.
SeriesSampleInstrumentOrganismTitleCell Source
GSE86977GSM2312111Illumina HiSeq 2500Homo sapiens12Dn4_A04cultured embryonic stem cells[DCX-][12]
GSE86977GSM2312112Illumina HiSeq 2500Homo sapiens12Dn3_D01cultured embryonic stem cells[DCX-][12]
GSE86977GSM2312113Illumina HiSeq 2500Homo sapiens12Dn3_E07cultured embryonic stem cells[DCX-][12]
GSE86977GSM2312114Illumina HiSeq 2500Homo sapiens12Dn3_H11cultured embryonic stem cells[DCX-][12]
GSE86977GSM2312115Illumina HiSeq 2500Homo sapiens12Dn4_E11cultured embryonic stem cells[DCX-][12]
GSE86977GSM2312116Illumina HiSeq 2500Homo sapiens12Dn2_B05cultured embryonic stem cells[DCX-][12]
GSE86977GSM2312117Illumina HiSeq 2500Homo sapiens12Dn4_G11cultured embryonic stem cells[DCX-][12]
GSE86977GSM2312118Illumina HiSeq 2500Homo sapiens12Dn4_B11cultured embryonic stem cells[DCX-][12]
GSE86977GSM2312119Illumina HiSeq 2500Homo sapiens12Dn4_C11cultured embryonic stem cells[DCX-][12]
GSE86977GSM2312120Illumina HiSeq 2500Homo sapiens12Dn4_F11cultured embryonic stem cells[DCX-][12]

Gene rank in cultured embryonic stem cells[DCX-][12]

Displaying 61-70 of 23636 results.
Rank orderGene SymbolEnsembl ID
61RPL36AENSG00000241343
62RPS4XENSG00000198034
63RPS25ENSG00000118181
64RPS14ENSG00000164587
65RPL24ENSG00000114391
66RPS27AENSG00000143947
67RPS21ENSG00000171858
68RPS13ENSG00000110700
69MIR663BENSG00000221288
70RPL3ENSG00000100316