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  cultured embryonic stem cells[DCX-][19]

Overall DesignThe transcriptomes of 2684 single cells were profiled by CelSeq at different timepoints throughout a 54-day differentiation protocol that converted H1 human embryonic stem cells to a variety of brain cell types.
SummaryDuring development of the human brain, multiple cell types with diverse regional identities are generated. Here we report a system to generate early human brain forebrain and mid/hindbrain cell types from human embryonic stem cells (hESCs), and infer and experimentally confirm a lineage tree for the generation of these types based on single-cell RNA-Seq analysis. We engineered SOX2Cit/+ and DCXCit/Y hESC lines to target progenitors and neurons throughout neural differentiation for single-cell transcriptomic profiling, then identified discrete cell types consisting of both rostral (cortical) and caudal (mid/hindbrain) identities. Direct comparison of the cell types were made to primary tissues using gene expression atlases and fetal human brain single-cell gene expression data, and this established that the cell types resembled early human brain cell types, including preplate cells. From the single-cell transcriptomic data a Bayesian algorithm generated a unified lineage tree, and predicted novel regulatory transcription factors. The lineage tree highlighted a prominent bifurcation between cortical and mid/hindbrain cell types, confirmed by clonal analysis experiments. We demonstrated that cell types from either branch could preferentially generated by manipulation of the canonical Wnt/beta-catenin pathway. In summary, we present an experimentally validated lineage tree that encompasses multiple brain regions, and our work sheds light on the molecular regulation of region-specific neural lineages during human brain development.
Dataset viewGSE86977
PMIDNA

Samples in cultured embryonic stem cells[DCX-][19]

Displaying 11-20 of 110 results.
SeriesSampleInstrumentOrganismTitleCell Source
GSE86977GSM2312332Illumina HiSeq 2500Homo sapiens19Dn2b_A09cultured embryonic stem cells[DCX-][19]
GSE86977GSM2312333Illumina HiSeq 2500Homo sapiens19Dn2b_A08cultured embryonic stem cells[DCX-][19]
GSE86977GSM2312334Illumina HiSeq 2500Homo sapiens19Dn2b_B09cultured embryonic stem cells[DCX-][19]
GSE86977GSM2312335Illumina HiSeq 2500Homo sapiens19Dn2b_B08cultured embryonic stem cells[DCX-][19]
GSE86977GSM2312336Illumina HiSeq 2500Homo sapiens19Dn2b_C09cultured embryonic stem cells[DCX-][19]
GSE86977GSM2312337Illumina HiSeq 2500Homo sapiens19Dn2b_C08cultured embryonic stem cells[DCX-][19]
GSE86977GSM2312338Illumina HiSeq 2500Homo sapiens19Dn2b_C07cultured embryonic stem cells[DCX-][19]
GSE86977GSM2312339Illumina HiSeq 2500Homo sapiens19Dn2b_B07cultured embryonic stem cells[DCX-][19]
GSE86977GSM2312340Illumina HiSeq 2500Homo sapiens19Dn2b_C06cultured embryonic stem cells[DCX-][19]
GSE86977GSM2312341Illumina HiSeq 2500Homo sapiens19Dn2b_C05cultured embryonic stem cells[DCX-][19]

Gene rank in cultured embryonic stem cells[DCX-][19]

Displaying 23611-23620 of 23636 results.
Rank orderGene SymbolEnsembl ID
23611XAGE2ENSG00000155622
23612XAGE2B
23613XAGE3ENSG00000171402
23614XCL1ENSG00000143184
23615XCR1ENSG00000173578
23616XKRXENSG00000182489
23617XKRY2ENSG00000244646
23618YIPF7ENSG00000177752
23619ZBTB20-AS1ENSG00000241560
23620ZC2HC1BENSG00000118491