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  cultured embryonic stem cells[DCX-][40]

Overall DesignThe transcriptomes of 2684 single cells were profiled by CelSeq at different timepoints throughout a 54-day differentiation protocol that converted H1 human embryonic stem cells to a variety of brain cell types.
SummaryDuring development of the human brain, multiple cell types with diverse regional identities are generated. Here we report a system to generate early human brain forebrain and mid/hindbrain cell types from human embryonic stem cells (hESCs), and infer and experimentally confirm a lineage tree for the generation of these types based on single-cell RNA-Seq analysis. We engineered SOX2Cit/+ and DCXCit/Y hESC lines to target progenitors and neurons throughout neural differentiation for single-cell transcriptomic profiling, then identified discrete cell types consisting of both rostral (cortical) and caudal (mid/hindbrain) identities. Direct comparison of the cell types were made to primary tissues using gene expression atlases and fetal human brain single-cell gene expression data, and this established that the cell types resembled early human brain cell types, including preplate cells. From the single-cell transcriptomic data a Bayesian algorithm generated a unified lineage tree, and predicted novel regulatory transcription factors. The lineage tree highlighted a prominent bifurcation between cortical and mid/hindbrain cell types, confirmed by clonal analysis experiments. We demonstrated that cell types from either branch could preferentially generated by manipulation of the canonical Wnt/beta-catenin pathway. In summary, we present an experimentally validated lineage tree that encompasses multiple brain regions, and our work sheds light on the molecular regulation of region-specific neural lineages during human brain development.
Dataset viewGSE86977
PMIDNA

Samples in cultured embryonic stem cells[DCX-][40]

Displaying 111-120 of 156 results.
SeriesSampleInstrumentOrganismTitleCell Source
GSE86977GSM2313589Illumina HiSeq 2500Homo sapiens40Dn1d_D02cultured embryonic stem cells[DCX-][40]
GSE86977GSM2313588Illumina HiSeq 2500Homo sapiens40Dn1_A10cultured embryonic stem cells[DCX-][40]
GSE86977GSM2313587Illumina HiSeq 2500Homo sapiens40Dn1_A09cultured embryonic stem cells[DCX-][40]
GSE86977GSM2313586Illumina HiSeq 2500Homo sapiens40Dn1d_D01cultured embryonic stem cells[DCX-][40]
GSE86977GSM2313585Illumina HiSeq 2500Homo sapiens40Dn1_D07cultured embryonic stem cells[DCX-][40]
GSE86977GSM2313584Illumina HiSeq 2500Homo sapiens40Dn1_C03cultured embryonic stem cells[DCX-][40]
GSE86977GSM2313583Illumina HiSeq 2500Homo sapiens40Dn1_D02cultured embryonic stem cells[DCX-][40]
GSE86977GSM2313582Illumina HiSeq 2500Homo sapiens40Dn1_B01cultured embryonic stem cells[DCX-][40]
GSE86977GSM2313581Illumina HiSeq 2500Homo sapiens40Dn2_A05cultured embryonic stem cells[DCX-][40]
GSE86977GSM2313580Illumina HiSeq 2500Homo sapiens40Dn2_B02cultured embryonic stem cells[DCX-][40]

Gene rank in cultured embryonic stem cells[DCX-][40]

Displaying 23611-23620 of 23636 results.
Rank orderGene SymbolEnsembl ID
23611VSTM5ENSG00000214376
23612VWC2LENSG00000174453
23613WFDC10AENSG00000180305
23614WFDC10BENSG00000182931
23615WFDC11ENSG00000180083
23616WFDC8ENSG00000158901
23617WFDC9ENSG00000180205
23618XAGE1AENSG00000204379
23619XAGE1BENSG00000204382
23620XAGE1C