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  cultured embryonic stem cells (H1) DAPI- Live cells FRSCR

Overall Design26 Llive and 19 Fixed cultured hESCs were prepared and sequenced using both FRISCR and TritonX-100 Lysis as proof of principal for FRSCR.
SummaryThe human neocortex is created from diverse progenitors that are intermixed with multiple cell types in the prenatal germinal zones. These progenitors have been difficult to profile with unbiased transcriptomics since progenitors-particularly radial glia (RG)-are rare cell types, defined by a combination of intracellular markers, position and morphology. To circumvent these problems, we developed a method called FRSCR for transcriptome profiling of individual fixed, stained, and sorted cells. After validation of FRSCR with human embryonic stem cells, we profiled primary human RG that constitute only 1% of the mid-gestation cortex. These data showed that RG could be classified into ventricle zone-enriched RG (vRG) that expressed ANXA1 and CRYAB, and outer subventricular zone-localized RG (oRG) that expressed HOPX. Our study identified the first markers and molecular profiles of vRG and oRG cells, and provides an essential step for understanding molecular networks that control the development and lineage of human neocortical progenitors. Furthermore, FRSCR allows targeted single-cell transcriptomic profiling of many tissues that currently lack live-cell markers.
Dataset viewGSE71858
PMID26524239

Samples in cultured embryonic stem cells (H1) DAPI- Live cells FRSCR

Displaying 11-15 of 15 results.
SeriesSampleInstrumentOrganismTitleCell Source
GSE71858GSM1846974Illumina HiSeq 2500Homo sapiensLive_PLRC [US-1457351-12]cultured embryonic stem cells (H1) DAPI- Live cells FRSCR
GSE71858GSM1846975Illumina HiSeq 2500Homo sapiensLive_PLRC [US-1457351-13]cultured embryonic stem cells (H1) DAPI- Live cells FRSCR
GSE71858GSM1846991Illumina HiSeq 2500Homo sapiensLive_PLRC [US-1457351-7]cultured embryonic stem cells (H1) DAPI- Live cells FRSCR
GSE71858GSM1846992Illumina HiSeq 2500Homo sapiensLive_PLRC [US-1457351-8]cultured embryonic stem cells (H1) DAPI- Live cells FRSCR
GSE71858GSM1846993Illumina HiSeq 2500Homo sapiensLive_PLRC [US-1457351-9]cultured embryonic stem cells (H1) DAPI- Live cells FRSCR

Gene rank in cultured embryonic stem cells (H1) DAPI- Live cells FRSCR

Displaying 17301-17310 of 17315 results.
Rank orderGene SymbolEnsembl ID
17301c6_tRNA-Ala-GCA
17302c6_tRNA-Ala-GCY
17303c6_tRNA-Ala-GCY_
17304c6_tRNA-Arg-CGG
17305c6_tRNA-Glu-GAG_
17306c6_tRNA-His-CAY_
17307c6_tRNA-Leu-TTA
17308c6_tRNA-Leu-TTG
17309c6_tRNA-Lys-AAG
17310c6_tRNA-Ser-AGY