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  glioblastoma [Mes]

Overall DesignOperative specimens from five glioblastoma patients (MGH26, MGH28, MGH29, MGH30, MGH31) were acutely dissociated, depleted for CD45+ inflammatory cells and then sorted as single cells (576 samples). Population controls for each tumor were isolated by sorting 2000-10000 cells and processed in parallel (5 population control samples). Single cells from two established cell lines, GBM6 and GBM8, were also sorted as single cells (192 samples).
SummaryWe report transcriptomes from 430 single glioblastoma cells isolated from 5 individual tumors and 102 single cells from gliomasphere cells lines generated using SMART-seq. In addition, we report population RNA-seq from the five tumors as well as RNA-seq from cell lines derived from 3 tumors (MGH26, MGH28, MGH31) cultured under serum free (GSC) and differentiated (DGC) conditions. This dataset highlights intratumoral heterogeneity with regards to the expression of de novo derived transcriptional modules and established subtype classifiers.
Dataset viewGSE57872
PMID24925914

Samples in glioblastoma [Mes]

Displaying 101-101 of 101 results.
SeriesSampleInstrumentOrganismTitleCell Source
GSE57872GSM1395963Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH31_H01glioblastoma [Mes]

Gene rank in glioblastoma [Mes]

Displaying 5791-5800 of 5942 results.
Rank orderGene SymbolEnsembl ID
5791ACSBG1ENSG00000103740
5792ZNF318ENSG00000171467
5793IKZF2ENSG00000030419
5794AKAP8LENSG00000011243
5795HSPA2ENSG00000126803
5796SEZ6LENSG00000100095
5797RHDENSG00000187010
5798PTPROENSG00000151490
5799CLDN11ENSG00000013297
5800POLQENSG00000051341