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  glioblastoma [Mes]

Overall DesignOperative specimens from five glioblastoma patients (MGH26, MGH28, MGH29, MGH30, MGH31) were acutely dissociated, depleted for CD45+ inflammatory cells and then sorted as single cells (576 samples). Population controls for each tumor were isolated by sorting 2000-10000 cells and processed in parallel (5 population control samples). Single cells from two established cell lines, GBM6 and GBM8, were also sorted as single cells (192 samples).
SummaryWe report transcriptomes from 430 single glioblastoma cells isolated from 5 individual tumors and 102 single cells from gliomasphere cells lines generated using SMART-seq. In addition, we report population RNA-seq from the five tumors as well as RNA-seq from cell lines derived from 3 tumors (MGH26, MGH28, MGH31) cultured under serum free (GSC) and differentiated (DGC) conditions. This dataset highlights intratumoral heterogeneity with regards to the expression of de novo derived transcriptional modules and established subtype classifiers.
Dataset viewGSE57872
PMID24925914

Samples in glioblastoma [Mes]

Displaying 11-20 of 101 results.
SeriesSampleInstrumentOrganismTitleCell Source
GSE57872GSM1395607Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH28_B05glioblastoma [Mes]
GSE57872GSM1395609Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH28_B07glioblastoma [Mes]
GSE57872GSM1395610Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH28_B08glioblastoma [Mes]
GSE57872GSM1395612Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH28_B10glioblastoma [Mes]
GSE57872GSM1395613Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH28_B11glioblastoma [Mes]
GSE57872GSM1395617Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH28_C03glioblastoma [Mes]
GSE57872GSM1395619Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH28_C05glioblastoma [Mes]
GSE57872GSM1395620Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH28_C06glioblastoma [Mes]
GSE57872GSM1395621Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH28_C07glioblastoma [Mes]
GSE57872GSM1395622Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH28_C08glioblastoma [Mes]

Gene rank in glioblastoma [Mes]

Displaying 21-30 of 5942 results.
Rank orderGene SymbolEnsembl ID
21FOSENSG00000170345
22C6orf62ENSG00000112308
23GLULENSG00000135821
24H3F3BENSG00000132475
25TUBA1BENSG00000123416
26HNRNPA2B1ENSG00000122566
27MT-CYBENSG00000198727
28CALM2ENSG00000143933
29MT-ND5ENSG00000198786
30CTSBENSG00000164733