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  glioblastoma [Mes]

Overall DesignOperative specimens from five glioblastoma patients (MGH26, MGH28, MGH29, MGH30, MGH31) were acutely dissociated, depleted for CD45+ inflammatory cells and then sorted as single cells (576 samples). Population controls for each tumor were isolated by sorting 2000-10000 cells and processed in parallel (5 population control samples). Single cells from two established cell lines, GBM6 and GBM8, were also sorted as single cells (192 samples).
SummaryWe report transcriptomes from 430 single glioblastoma cells isolated from 5 individual tumors and 102 single cells from gliomasphere cells lines generated using SMART-seq. In addition, we report population RNA-seq from the five tumors as well as RNA-seq from cell lines derived from 3 tumors (MGH26, MGH28, MGH31) cultured under serum free (GSC) and differentiated (DGC) conditions. This dataset highlights intratumoral heterogeneity with regards to the expression of de novo derived transcriptional modules and established subtype classifiers.
Dataset viewGSE57872
PMID24925914

Samples in glioblastoma [Mes]

Displaying 71-80 of 101 results.
SeriesSampleInstrumentOrganismTitleCell Source
GSE57872GSM1395677Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH28_H03glioblastoma [Mes]
GSE57872GSM1395678Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH28_H04glioblastoma [Mes]
GSE57872GSM1395934Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH31_E08glioblastoma [Mes]
GSE57872GSM1395679Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH28_H05glioblastoma [Mes]
GSE57872GSM1395680Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH28_H06glioblastoma [Mes]
GSE57872GSM1395681Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH28_H07glioblastoma [Mes]
GSE57872GSM1395683Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH28_H09glioblastoma [Mes]
GSE57872GSM1395684Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH28_H10glioblastoma [Mes]
GSE57872GSM1395690Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH29_A04glioblastoma [Mes]
GSE57872GSM1395946Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH31_F08glioblastoma [Mes]

Gene rank in glioblastoma [Mes]

Displaying 51-60 of 5942 results.
Rank orderGene SymbolEnsembl ID
51GAP43ENSG00000172020
52SKP1ENSG00000113558
53MIR3198-2
54NRCAMENSG00000091129
55ANXA5ENSG00000164111
56TMED10ENSG00000170348
57GPM6AENSG00000150625
58CALUENSG00000128595
59SYT11ENSG00000132718
60RPN2ENSG00000118705