Loading
scRNASeqDB
Home » Search by Cell » Cell View

Cell View

Cell Information

  glioblastoma [Mes]

Overall DesignOperative specimens from five glioblastoma patients (MGH26, MGH28, MGH29, MGH30, MGH31) were acutely dissociated, depleted for CD45+ inflammatory cells and then sorted as single cells (576 samples). Population controls for each tumor were isolated by sorting 2000-10000 cells and processed in parallel (5 population control samples). Single cells from two established cell lines, GBM6 and GBM8, were also sorted as single cells (192 samples).
SummaryWe report transcriptomes from 430 single glioblastoma cells isolated from 5 individual tumors and 102 single cells from gliomasphere cells lines generated using SMART-seq. In addition, we report population RNA-seq from the five tumors as well as RNA-seq from cell lines derived from 3 tumors (MGH26, MGH28, MGH31) cultured under serum free (GSC) and differentiated (DGC) conditions. This dataset highlights intratumoral heterogeneity with regards to the expression of de novo derived transcriptional modules and established subtype classifiers.
Dataset viewGSE57872
PMID24925914

Samples in glioblastoma [Mes]

Displaying 11-20 of 101 results.
SeriesSampleInstrumentOrganismTitleCell Source
GSE57872GSM1395829Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH30_D11glioblastoma [Mes]
GSE57872GSM1395591Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH28_A01glioblastoma [Mes]
GSE57872GSM1395592Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH28_A02glioblastoma [Mes]
GSE57872GSM1395595Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH28_A05glioblastoma [Mes]
GSE57872GSM1395852Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH30_F10glioblastoma [Mes]
GSE57872GSM1395597Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH28_A07glioblastoma [Mes]
GSE57872GSM1395598Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH28_A08glioblastoma [Mes]
GSE57872GSM1395600Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH28_A10glioblastoma [Mes]
GSE57872GSM1395602Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH28_A12glioblastoma [Mes]
GSE57872GSM1395858Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH30_G04glioblastoma [Mes]

Gene rank in glioblastoma [Mes]

Displaying 5801-5810 of 5942 results.
Rank orderGene SymbolEnsembl ID
5801ZFP2ENSG00000198939
5802CHGBENSG00000089199
5803NRSN1ENSG00000152954
5804DOCK10ENSG00000135905
5805TMEM98ENSG00000006042
5806PLA2G2AENSG00000188257
5807OSBPENSG00000110048
5808TFENSG00000091513
5809PTPDC1ENSG00000158079
5810C6orf228