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  glioblastoma [None]

Overall DesignOperative specimens from five glioblastoma patients (MGH26, MGH28, MGH29, MGH30, MGH31) were acutely dissociated, depleted for CD45+ inflammatory cells and then sorted as single cells (576 samples). Population controls for each tumor were isolated by sorting 2000-10000 cells and processed in parallel (5 population control samples). Single cells from two established cell lines, GBM6 and GBM8, were also sorted as single cells (192 samples).
SummaryWe report transcriptomes from 430 single glioblastoma cells isolated from 5 individual tumors and 102 single cells from gliomasphere cells lines generated using SMART-seq. In addition, we report population RNA-seq from the five tumors as well as RNA-seq from cell lines derived from 3 tumors (MGH26, MGH28, MGH31) cultured under serum free (GSC) and differentiated (DGC) conditions. This dataset highlights intratumoral heterogeneity with regards to the expression of de novo derived transcriptional modules and established subtype classifiers.
Dataset viewGSE57872
PMID24925914

Samples in glioblastoma [None]

Displaying 111-120 of 120 results.
SeriesSampleInstrumentOrganismTitleCell Source
GSE57872GSM1395955Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH31_G05glioblastoma [None]
GSE57872GSM1395957Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH31_G07glioblastoma [None]
GSE57872GSM1395964Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH31_H02glioblastoma [None]
GSE57872GSM1395966Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH31_H04glioblastoma [None]
GSE57872GSM1395967Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH31_H05glioblastoma [None]
GSE57872GSM1395969Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH31_H07glioblastoma [None]
GSE57872GSM1395970Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH31_H08glioblastoma [None]
GSE57872GSM1395971Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH31_H09glioblastoma [None]
GSE57872GSM1395972Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH31_H10glioblastoma [None]
GSE57872GSM1395974Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH31_H12glioblastoma [None]

Gene rank in glioblastoma [None]

Displaying 41-50 of 5942 results.
Rank orderGene SymbolEnsembl ID
41ATP9BENSG00000166377
42EIF4G2ENSG00000110321
43SLC1A3ENSG00000079215
44ARL6IP1ENSG00000170540
45PPP1CBENSG00000213639
46TMSB4XENSG00000205542
47UBBENSG00000170315
48SEPT7ENSG00000122545
49HSP90AA1ENSG00000080824
50EIF1ENSG00000173812