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  glioblastoma [None]

Overall DesignOperative specimens from five glioblastoma patients (MGH26, MGH28, MGH29, MGH30, MGH31) were acutely dissociated, depleted for CD45+ inflammatory cells and then sorted as single cells (576 samples). Population controls for each tumor were isolated by sorting 2000-10000 cells and processed in parallel (5 population control samples). Single cells from two established cell lines, GBM6 and GBM8, were also sorted as single cells (192 samples).
SummaryWe report transcriptomes from 430 single glioblastoma cells isolated from 5 individual tumors and 102 single cells from gliomasphere cells lines generated using SMART-seq. In addition, we report population RNA-seq from the five tumors as well as RNA-seq from cell lines derived from 3 tumors (MGH26, MGH28, MGH31) cultured under serum free (GSC) and differentiated (DGC) conditions. This dataset highlights intratumoral heterogeneity with regards to the expression of de novo derived transcriptional modules and established subtype classifiers.
Dataset viewGSE57872
PMID24925914

Samples in glioblastoma [None]

Displaying 21-30 of 120 results.
SeriesSampleInstrumentOrganismTitleCell Source
GSE57872GSM1395593Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH28_A03glioblastoma [None]
GSE57872GSM1395596Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH28_A06glioblastoma [None]
GSE57872GSM1395601Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH28_A11glioblastoma [None]
GSE57872GSM1395604Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH28_B02glioblastoma [None]
GSE57872GSM1395608Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH28_B06glioblastoma [None]
GSE57872GSM1395615Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH28_C01glioblastoma [None]
GSE57872GSM1395632Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH28_D06glioblastoma [None]
GSE57872GSM1395635Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH28_D09glioblastoma [None]
GSE57872GSM1395636Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH28_D10glioblastoma [None]
GSE57872GSM1395639Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH28_E01glioblastoma [None]

Gene rank in glioblastoma [None]

Displaying 5901-5910 of 5942 results.
Rank orderGene SymbolEnsembl ID
5901GPR17ENSG00000144230
5902PLA2G2AENSG00000188257
5903NID2ENSG00000087303
5904RGS1ENSG00000090104
5905ULBP1ENSG00000111981
5906KCND1ENSG00000102057
5907HTR3BENSG00000149305
5908KIF20AENSG00000112984
5909C1orf87ENSG00000162598
5910DCNENSG00000011465