Loading
scRNASeqDB
Home » Search by Cell » Cell View

Cell View

Cell Information

  glioblastoma [None]

Overall DesignOperative specimens from five glioblastoma patients (MGH26, MGH28, MGH29, MGH30, MGH31) were acutely dissociated, depleted for CD45+ inflammatory cells and then sorted as single cells (576 samples). Population controls for each tumor were isolated by sorting 2000-10000 cells and processed in parallel (5 population control samples). Single cells from two established cell lines, GBM6 and GBM8, were also sorted as single cells (192 samples).
SummaryWe report transcriptomes from 430 single glioblastoma cells isolated from 5 individual tumors and 102 single cells from gliomasphere cells lines generated using SMART-seq. In addition, we report population RNA-seq from the five tumors as well as RNA-seq from cell lines derived from 3 tumors (MGH26, MGH28, MGH31) cultured under serum free (GSC) and differentiated (DGC) conditions. This dataset highlights intratumoral heterogeneity with regards to the expression of de novo derived transcriptional modules and established subtype classifiers.
Dataset viewGSE57872
PMID24925914

Samples in glioblastoma [None]

Displaying 1-10 of 120 results.
SeriesSampleInstrumentOrganismTitleCell Source
GSE57872GSM1395509Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH26-2_B03glioblastoma [None]
GSE57872GSM1395519Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH26-2_C01glioblastoma [None]
GSE57872GSM1395781Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH29_H11glioblastoma [None]
GSE57872GSM1395790Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH30_A08glioblastoma [None]
GSE57872GSM1395793Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH30_A11glioblastoma [None]
GSE57872GSM1395794Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH30_A12glioblastoma [None]
GSE57872GSM1395796Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH30_B02glioblastoma [None]
GSE57872GSM1395542Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH26-2_D12glioblastoma [None]
GSE57872GSM1395803Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH30_B09glioblastoma [None]
GSE57872GSM1395806Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH30_B12glioblastoma [None]

Gene rank in glioblastoma [None]

Displaying 5931-5940 of 5942 results.
Rank orderGene SymbolEnsembl ID
5931OR5I1ENSG00000167825
5932PLA1AENSG00000144837
5933GMNCENSG00000205835
5934TPH1ENSG00000129167
5935IQSEC2ENSG00000124313
5936DEFA1ENSG00000206047
5937SPRR2AENSG00000241794
5938KRT73ENSG00000186049
5939KLHDC7AENSG00000179023
5940STATHENSG00000126549