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  single H1-Fucci cell sorted from G1 phase of the cell cycle only

Overall DesignTotal 213 H1 single cells and 247 H1-Fucci single cells were sequenced. The 213 H1 cells were used to evaluate Oscope in identifying oscillatory genes. The H1-Fucci cells were used to confirm the cell cycle gene cluster identified by Oscope in the H1 hESCs. Normalized expected counts are provided in GSE64016_H1andFUCCI_normalized_EC.csv.gz
SummaryOscillatory gene expression is fundamental to mammalian development, but technologies to monitor expression oscillations are limited. We have developed a statistical approach called Oscope to identify and characterize the transcriptional dynamics of oscillating genes in single-cell RNA-seq data from an unsynchronized cell population. Applications to a number of data sets, include a single-cell RNA-seq data set of human embroyonic stem cells (hESCs), demonstrate advantages of the approach and also identify a potential artifact in the Fluidigm C1 platform.
Dataset viewGSE64016
PMID26301841

Samples in single H1-Fucci cell sorted from G1 phase of the cell cycle only

Displaying 21-30 of 91 results.
SeriesSampleInstrumentOrganismTitleCell Source
GSE64016GSM1562622Illumina HiSeq 2500Homo sapiensG1_Exp1.021single H1-Fucci cell sorted from G1 phase of the cell cycle only
GSE64016GSM1562624Illumina HiSeq 2500Homo sapiensG1_Exp1.022single H1-Fucci cell sorted from G1 phase of the cell cycle only
GSE64016GSM1562626Illumina HiSeq 2500Homo sapiensG1_Exp1.023single H1-Fucci cell sorted from G1 phase of the cell cycle only
GSE64016GSM1562630Illumina HiSeq 2500Homo sapiensG1_Exp1.024single H1-Fucci cell sorted from G1 phase of the cell cycle only
GSE64016GSM1562632Illumina HiSeq 2500Homo sapiensG1_Exp1.025single H1-Fucci cell sorted from G1 phase of the cell cycle only
GSE64016GSM1562634Illumina HiSeq 2500Homo sapiensG1_Exp1.026single H1-Fucci cell sorted from G1 phase of the cell cycle only
GSE64016GSM1562635Illumina HiSeq 2500Homo sapiensG1_Exp1.027single H1-Fucci cell sorted from G1 phase of the cell cycle only
GSE64016GSM1562636Illumina HiSeq 2500Homo sapiensG1_Exp1.028single H1-Fucci cell sorted from G1 phase of the cell cycle only
GSE64016GSM1562637Illumina HiSeq 2500Homo sapiensG1_Exp1.029single H1-Fucci cell sorted from G1 phase of the cell cycle only
GSE64016GSM1562638Illumina HiSeq 2500Homo sapiensG1_Exp1.030single H1-Fucci cell sorted from G1 phase of the cell cycle only

Gene rank in single H1-Fucci cell sorted from G1 phase of the cell cycle only

Displaying 21-30 of 17544 results.
Rank orderGene SymbolEnsembl ID
21RPL15ENSG00000174748
22CD24ENSG00000272398
23RPL7ENSG00000147604
24HMGB1ENSG00000189403
25TPI1ENSG00000111669
26RPLP0ENSG00000089157
27HNRNPA2B1ENSG00000122566
28PPP1CBENSG00000213639
29RPL5ENSG00000122406
30SRSF6ENSG00000124193