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  single H1-Fucci cell sorted from S phase of the cell cycle only

Overall DesignTotal 213 H1 single cells and 247 H1-Fucci single cells were sequenced. The 213 H1 cells were used to evaluate Oscope in identifying oscillatory genes. The H1-Fucci cells were used to confirm the cell cycle gene cluster identified by Oscope in the H1 hESCs. Normalized expected counts are provided in GSE64016_H1andFUCCI_normalized_EC.csv.gz
SummaryOscillatory gene expression is fundamental to mammalian development, but technologies to monitor expression oscillations are limited. We have developed a statistical approach called Oscope to identify and characterize the transcriptional dynamics of oscillating genes in single-cell RNA-seq data from an unsynchronized cell population. Applications to a number of data sets, include a single-cell RNA-seq data set of human embroyonic stem cells (hESCs), demonstrate advantages of the approach and also identify a potential artifact in the Fluidigm C1 platform.
Dataset viewGSE64016
PMID26301841

Samples in single H1-Fucci cell sorted from S phase of the cell cycle only

Displaying 21-30 of 80 results.
SeriesSampleInstrumentOrganismTitleCell Source
GSE64016GSM1562720Illumina HiSeq 2500Homo sapiensS_Exp1.021single H1-Fucci cell sorted from S phase of the cell cycle only
GSE64016GSM1562721Illumina HiSeq 2500Homo sapiensS_Exp1.022single H1-Fucci cell sorted from S phase of the cell cycle only
GSE64016GSM1562722Illumina HiSeq 2500Homo sapiensS_Exp1.023single H1-Fucci cell sorted from S phase of the cell cycle only
GSE64016GSM1562723Illumina HiSeq 2500Homo sapiensS_Exp1.025single H1-Fucci cell sorted from S phase of the cell cycle only
GSE64016GSM1562724Illumina HiSeq 2500Homo sapiensS_Exp1.026single H1-Fucci cell sorted from S phase of the cell cycle only
GSE64016GSM1562725Illumina HiSeq 2500Homo sapiensS_Exp1.027single H1-Fucci cell sorted from S phase of the cell cycle only
GSE64016GSM1562726Illumina HiSeq 2500Homo sapiensS_Exp1.028single H1-Fucci cell sorted from S phase of the cell cycle only
GSE64016GSM1562727Illumina HiSeq 2500Homo sapiensS_Exp1.029single H1-Fucci cell sorted from S phase of the cell cycle only
GSE64016GSM1562728Illumina HiSeq 2500Homo sapiensS_Exp1.030single H1-Fucci cell sorted from S phase of the cell cycle only
GSE64016GSM1562729Illumina HiSeq 2500Homo sapiensS_Exp1.031single H1-Fucci cell sorted from S phase of the cell cycle only

Gene rank in single H1-Fucci cell sorted from S phase of the cell cycle only

Displaying 17531-17540 of 17544 results.
Rank orderGene SymbolEnsembl ID
17531ZPBPENSG00000042813
17532GOLGA7BENSG00000155265
17533AMDHD1ENSG00000139344
17534MEOX1ENSG00000005102
17535UROC1ENSG00000159650
17536CALML3ENSG00000178363
17537AMELXENSG00000125363
17538ENPP3ENSG00000154269
17539RAG1ENSG00000166349
17540ATP4BENSG00000186009