scRNASeqDB - CellView Site

Overall Design	Total 213 H1 single cells and 247 H1-Fucci single cells were sequenced. The 213 H1 cells were used to evaluate Oscope in identifying oscillatory genes. The H1-Fucci cells were used to confirm the cell cycle gene cluster identified by Oscope in the H1 hESCs. Normalized expected counts are provided in GSE64016_H1andFUCCI_normalized_EC.csv.gz
Summary	Oscillatory gene expression is fundamental to mammalian development, but technologies to monitor expression oscillations are limited. We have developed a statistical approach called Oscope to identify and characterize the transcriptional dynamics of oscillating genes in single-cell RNA-seq data from an unsynchronized cell population. Applications to a number of data sets, include a single-cell RNA-seq data set of human embroyonic stem cells (hESCs), demonstrate advantages of the approach and also identify a potential artifact in the Fluidigm C1 platform.
Dataset view	GSE64016
PMID	26301841

Displaying 41-50 of 80 results.

Series	Sample	Instrument	Organism	Title	Cell Source
GSE64016	GSM1562740	Illumina HiSeq 2500	Homo sapiens	S_Exp1.042	single H1-Fucci cell sorted from S phase of the cell cycle only
GSE64016	GSM1562741	Illumina HiSeq 2500	Homo sapiens	S_Exp1.043	single H1-Fucci cell sorted from S phase of the cell cycle only
GSE64016	GSM1562742	Illumina HiSeq 2500	Homo sapiens	S_Exp1.044	single H1-Fucci cell sorted from S phase of the cell cycle only
GSE64016	GSM1562743	Illumina HiSeq 2500	Homo sapiens	S_Exp1.045	single H1-Fucci cell sorted from S phase of the cell cycle only
GSE64016	GSM1562744	Illumina HiSeq 2500	Homo sapiens	S_Exp1.046	single H1-Fucci cell sorted from S phase of the cell cycle only
GSE64016	GSM1562745	Illumina HiSeq 2500	Homo sapiens	S_Exp1.047	single H1-Fucci cell sorted from S phase of the cell cycle only
GSE64016	GSM1562746	Illumina HiSeq 2500	Homo sapiens	S_Exp1.048	single H1-Fucci cell sorted from S phase of the cell cycle only
GSE64016	GSM1562747	Illumina HiSeq 2500	Homo sapiens	S_Exp1.049	single H1-Fucci cell sorted from S phase of the cell cycle only
GSE64016	GSM1562748	Illumina HiSeq 2500	Homo sapiens	S_Exp1.050	single H1-Fucci cell sorted from S phase of the cell cycle only
GSE64016	GSM1562749	Illumina HiSeq 2500	Homo sapiens	S_Exp1.051	single H1-Fucci cell sorted from S phase of the cell cycle only

Displaying 41-50 of 17544 results.