scRNASeqDB - CellView Site

Overall Design	Total 213 H1 single cells and 247 H1-Fucci single cells were sequenced. The 213 H1 cells were used to evaluate Oscope in identifying oscillatory genes. The H1-Fucci cells were used to confirm the cell cycle gene cluster identified by Oscope in the H1 hESCs. Normalized expected counts are provided in GSE64016_H1andFUCCI_normalized_EC.csv.gz
Summary	Oscillatory gene expression is fundamental to mammalian development, but technologies to monitor expression oscillations are limited. We have developed a statistical approach called Oscope to identify and characterize the transcriptional dynamics of oscillating genes in single-cell RNA-seq data from an unsynchronized cell population. Applications to a number of data sets, include a single-cell RNA-seq data set of human embroyonic stem cells (hESCs), demonstrate advantages of the approach and also identify a potential artifact in the Fluidigm C1 platform.
Dataset view	GSE64016
PMID	26301841

Displaying 181-190 of 213 results.

Series	Sample	Instrument	Organism	Title	Cell Source
GSE64016	GSM1562567	Illumina HiSeq 2500	Homo sapiens	H1_Exp3.259	single H1 hESC
GSE64016	GSM1562568	Illumina HiSeq 2500	Homo sapiens	H1_Exp3.260	single H1 hESC
GSE64016	GSM1562569	Illumina HiSeq 2500	Homo sapiens	H1_Exp3.261	single H1 hESC
GSE64016	GSM1562570	Illumina HiSeq 2500	Homo sapiens	H1_Exp3.262	single H1 hESC
GSE64016	GSM1562571	Illumina HiSeq 2500	Homo sapiens	H1_Exp3.263	single H1 hESC
GSE64016	GSM1562572	Illumina HiSeq 2500	Homo sapiens	H1_Exp3.264	single H1 hESC
GSE64016	GSM1562573	Illumina HiSeq 2500	Homo sapiens	H1_Exp3.265	single H1 hESC
GSE64016	GSM1562574	Illumina HiSeq 2500	Homo sapiens	H1_Exp3.266	single H1 hESC
GSE64016	GSM1562575	Illumina HiSeq 2500	Homo sapiens	H1_Exp3.267	single H1 hESC
GSE64016	GSM1562576	Illumina HiSeq 2500	Homo sapiens	H1_Exp3.268	single H1 hESC

Displaying 41-50 of 17544 results.