gene,0,0 GSM967508,0,2.505 GSM967509,0,0 GSM967510,0,0.01 GSM967511,0,0 GSM967512,0,0 GSM967513,0,0 GSM967514,0,14.685 GSM967515,0,14.552 GSM967516,0,0.02 GSM967517,0,0.046 GSM967518,0,0.024 GSM967519,0,0.023 GSM967520,0,0 GSM967521,0,0.012 GSM967535,0,0.037 GSM967536,0,0 GSM967537,0,0 GSM967538,0,0.009 GSM967539,0,0 GSM967540,0,0.056 GSM967541,0,0.03 GSM967542,0,21.739 GSM967543,0,0.011 GSM967544,0,5.392 GSM967545,0,26.638 GSM967546,0,0.192 GSM967547,0,0.402 GSM967548,0,19.862 GSM967549,0,11.062 GSM967550,0,18.696 GSM967551,0,3.814 GSM967552,0,6.628 GSM967553,0,0.027 GSM967554,0,0.019 GSM967555,0,0 GSM967556,0,16.809 GSM967557,0,0
| Synonyms | ABC-1;ABC1;CERP;HDLDT1;TGD |
| Description | ATP binding cassette subfamily A member 1 |
|---|---|
| Chromosome | 9q31.1 |
| Database Reference | MIM:600046 HGNC:29 HPRD:02501 Vega:OTTHUMG00000020417 |
| See related | THE HUMAN PROTEIN ATLAS |
| Dataset | GSE38495 |
| ABCA1 expression in each cell group | Minimum Value (TPM) | Median Value (TPM) | Maximum Value (TPM) |
|---|---|---|---|
| Embryonic stem cell | 0 | 0.005 | 14.685 |
| LNCaP cell | 0 | 0.021 | 0.046 |
| NG2-sorted cell from blood | 0 | 0.005 | 0.056 |
| PC3 cell | 0.011 | 2.711 | 21.739 |
| Primary melanocyte | 0.192 | 13.415 | 26.638 |
| SKMEL5 cell | 0.402 | 14.879 | 19.862 |
| T24 cell | 0.019 | 1.92 | 6.628 |
| UACC257 cell | 0 | 0 | 16.809 |
| Comparing ABCA1 expression between groups | FDR |
|---|---|
| Embryonic stem cell VS LNCaP cell | NS |
| Embryonic stem cell VS NG2-sorted cell from blood | NS |
| Embryonic stem cell VS PC3 cell | NS |
| Embryonic stem cell VS Primary melanocyte | NS |
| Embryonic stem cell VS SKMEL5 cell | NS |
| Embryonic stem cell VS T24 cell | NS |
| Embryonic stem cell VS UACC257 cell | NS |
| LNCaP cell VS NG2-sorted cell from blood | NS |
| LNCaP cell VS PC3 cell | 0.00426510099125186 |
| LNCaP cell VS Primary melanocyte | 0.0192998285905835 |
| LNCaP cell VS SKMEL5 cell | 0.000267483901681759 |
| LNCaP cell VS T24 cell | 0.00348177171208597 |
| LNCaP cell VS UACC257 cell | 0.01660562223097 |
| NG2-sorted cell from blood VS PC3 cell | 0.0108526181974661 |
| NG2-sorted cell from blood VS Primary melanocyte | NS |
| NG2-sorted cell from blood VS SKMEL5 cell | 0.00690624906615592 |
| NG2-sorted cell from blood VS T24 cell | 0.0155139024610778 |
| NG2-sorted cell from blood VS UACC257 cell | NS |
| PC3 cell VS Primary melanocyte | NS |
| PC3 cell VS SKMEL5 cell | NS |
Top correlated genes were calculated by using Spearman rank correlation. Enrichment analysis can be performed on DAVID server using its API, while alternative links are also provided.
KEGG GO Others Embryonic stem cell[8]
LNCaP cell[6]
NG2-sorted cell from blood[6]
PC3 cell[4]
Primary melanocyte[2]
SKMEL5 cell[4]
T24 cell[4]
UACC257 cell[3]
