gene,0,0 GSM967508,0,331.187 GSM967509,0,126.673 GSM967510,0,112.597 GSM967511,0,361.537 GSM967512,0,380.266 GSM967513,0,203.428 GSM967514,0,307.694 GSM967515,0,284.283 GSM967516,0,42.768 GSM967517,0,61.346 GSM967518,0,27.418 GSM967519,0,24.302 GSM967520,0,50.779 GSM967521,0,49.299 GSM967535,0,34.74 GSM967536,0,34.595 GSM967537,0,66.296 GSM967538,0,82.919 GSM967539,0,47.031 GSM967540,0,168.704 GSM967541,0,61.262 GSM967542,0,30.955 GSM967543,0,64.524 GSM967544,0,14.003 GSM967545,0,74.117 GSM967546,0,7.372 GSM967547,0,45.815 GSM967548,0,19.199 GSM967549,0,40.073 GSM967550,0,35.759 GSM967551,0,84.934 GSM967552,0,43.45 GSM967553,0,51.823 GSM967554,0,75.588 GSM967555,0,0 GSM967556,0,0.03 GSM967557,0,7.165
| Synonyms | HMG-2a;HMG-4;HMG2A;HMG4 |
| Description | high mobility group box 3 |
|---|---|
| Chromosome | Xq28 |
| Database Reference | MIM:300193 HGNC:5004 HPRD:02181 Vega:OTTHUMG00000024162 |
| See related | THE HUMAN PROTEIN ATLAS |
| Dataset | GSE38495 |
| HMGB3 expression in each cell group | Minimum Value (TPM) | Median Value (TPM) | Maximum Value (TPM) |
|---|---|---|---|
| Embryonic stem cell | 112.597 | 295.988 | 380.266 |
| LNCaP cell | 24.302 | 46.033 | 61.346 |
| NG2-sorted cell from blood | 34.595 | 56.664 | 168.704 |
| PC3 cell | 14.003 | 46.109 | 64.524 |
| Primary melanocyte | 7.372 | 40.744 | 74.117 |
| SKMEL5 cell | 19.199 | 37.916 | 45.815 |
| T24 cell | 43.45 | 63.706 | 84.934 |
| UACC257 cell | 0 | 0.03 | 7.165 |
| Comparing HMGB3 expression between groups | FDR |
|---|---|
| Embryonic stem cell VS LNCaP cell | 0.000155773972011351 |
| Embryonic stem cell VS NG2-sorted cell from blood | 0.0172475126814737 |
| Embryonic stem cell VS PC3 cell | 0.00482925485100557 |
| Embryonic stem cell VS Primary melanocyte | NS |
| Embryonic stem cell VS SKMEL5 cell | 0.00123083013441738 |
| Embryonic stem cell VS T24 cell | 0.00623942359941577 |
| Embryonic stem cell VS UACC257 cell | 0.00765196998882437 |
| LNCaP cell VS NG2-sorted cell from blood | NS |
| LNCaP cell VS PC3 cell | NS |
| LNCaP cell VS Primary melanocyte | NS |
| LNCaP cell VS SKMEL5 cell | NS |
| LNCaP cell VS T24 cell | NS |
| LNCaP cell VS UACC257 cell | NS |
| NG2-sorted cell from blood VS PC3 cell | NS |
| NG2-sorted cell from blood VS Primary melanocyte | NS |
| NG2-sorted cell from blood VS SKMEL5 cell | NS |
| NG2-sorted cell from blood VS T24 cell | NS |
| NG2-sorted cell from blood VS UACC257 cell | NS |
| PC3 cell VS Primary melanocyte | NS |
| PC3 cell VS SKMEL5 cell | NS |
Top correlated genes were calculated by using Spearman rank correlation. Enrichment analysis can be performed on DAVID server using its API, while alternative links are also provided.
KEGG GO Others Embryonic stem cell[8]
LNCaP cell[6]
NG2-sorted cell from blood[6]
PC3 cell[4]
Primary melanocyte[2]
SKMEL5 cell[4]
T24 cell[4]
UACC257 cell[3]
