gene,0,0 GSM967508,0,0.097 GSM967509,0,0.131 GSM967510,0,41.263 GSM967511,0,0.05 GSM967512,0,7.632 GSM967513,0,0.144 GSM967514,0,1.809 GSM967515,0,0.124 GSM967516,0,656.259 GSM967517,0,244.457 GSM967518,0,383.466 GSM967519,0,475.754 GSM967520,0,519.545 GSM967521,0,507.93 GSM967535,0,6.803 GSM967536,0,11.976 GSM967537,0,1.525 GSM967538,0,7.728 GSM967539,0,5.453 GSM967540,0,0.018 GSM967541,0,0.154 GSM967542,0,8.418 GSM967543,0,0.062 GSM967544,0,45.847 GSM967545,0,0.02 GSM967546,0,0.183 GSM967547,0,0.653 GSM967548,0,13.7 GSM967549,0,6.505 GSM967550,0,31.948 GSM967551,0,55.6 GSM967552,0,18.737 GSM967553,0,57.854 GSM967554,0,25.185 GSM967555,0,0.265 GSM967556,0,25.964 GSM967557,0,16.439
| Synonyms | LIMCH1A;LMO7B |
| Description | LIM and calponin homology domains 1 |
|---|---|
| Chromosome | 4p13 |
| Database Reference | HGNC:29191 HPRD:11125 Vega:OTTHUMG00000160575 |
| See related | THE HUMAN PROTEIN ATLAS |
| Dataset | GSE38495 |
| LIMCH1 expression in each cell group | Minimum Value (TPM) | Median Value (TPM) | Maximum Value (TPM) |
|---|---|---|---|
| Embryonic stem cell | 0.05 | 0.138 | 41.263 |
| LNCaP cell | 244.457 | 491.842 | 656.259 |
| NG2-sorted cell from blood | 0.018 | 6.128 | 11.976 |
| PC3 cell | 0.062 | 4.286 | 45.847 |
| Primary melanocyte | 0.02 | 0.102 | 0.183 |
| SKMEL5 cell | 0.653 | 10.103 | 31.948 |
| T24 cell | 18.737 | 40.392 | 57.854 |
| UACC257 cell | 0.265 | 16.439 | 25.964 |
| Comparing LIMCH1 expression between groups | FDR |
|---|---|
| Embryonic stem cell VS LNCaP cell | 0.0096391351981933 |
| Embryonic stem cell VS NG2-sorted cell from blood | NS |
| Embryonic stem cell VS PC3 cell | NS |
| Embryonic stem cell VS Primary melanocyte | NS |
| Embryonic stem cell VS SKMEL5 cell | NS |
| Embryonic stem cell VS T24 cell | NS |
| Embryonic stem cell VS UACC257 cell | NS |
| LNCaP cell VS NG2-sorted cell from blood | 3.73262127217284e-05 |
| LNCaP cell VS PC3 cell | 0.0174981916516041 |
| LNCaP cell VS Primary melanocyte | NS |
| LNCaP cell VS SKMEL5 cell | 0.00209604322476527 |
| LNCaP cell VS T24 cell | 0.00117999938604404 |
| LNCaP cell VS UACC257 cell | 0.00736580914740564 |
| NG2-sorted cell from blood VS PC3 cell | NS |
| NG2-sorted cell from blood VS Primary melanocyte | NS |
| NG2-sorted cell from blood VS SKMEL5 cell | NS |
| NG2-sorted cell from blood VS T24 cell | 0.0365881632551057 |
| NG2-sorted cell from blood VS UACC257 cell | NS |
| PC3 cell VS Primary melanocyte | NS |
| PC3 cell VS SKMEL5 cell | NS |
Top correlated genes were calculated by using Spearman rank correlation. Enrichment analysis can be performed on DAVID server using its API, while alternative links are also provided.
KEGG GO Others Embryonic stem cell[8]
LNCaP cell[6]
NG2-sorted cell from blood[6]
PC3 cell[4]
Primary melanocyte[2]
SKMEL5 cell[4]
T24 cell[4]
UACC257 cell[3]
