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scRNASeqDB
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Gene View

General Information

SCN2A[ENSG00000136531]

SynonymsBFIC3;BFIS3;BFNIS;EIEE11;HBA;HBSCI;HBSCII;NAC2;Na(v)1.2;Nav1.2;SCN2A1;SCN2A2
Descriptionsodium voltage-gated channel alpha subunit 2
Chromosome2q24.3
Database ReferenceMIM:182390 HGNC:10588 HPRD:03133 Vega:OTTHUMG00000044172 
See relatedTHE HUMAN PROTEIN ATLAS
DatasetGSE75140

Gene Rank

Gene Expression

 

Displaying 1-9 of 9 results.
SCN2A expression in each cell groupMinimum Value (TPM)Median Value (TPM)Maximum Value (TPM)
ESC H9[53 days]00893.652
fetal human cortex 1[12 weeks post-conception]00825.812
fetal human cortex 2[13 weeks post-conception]00666.448
iPSC 409B2[33 days]00199.146
iPSC 409B2[35 days]00220.696
iPSC 409B2[37 days]00370.172
iPSC 409B2[41 days]00302.766
iPSC 409B2[58 days]00640.875
iPSC 409B2[65 days]00644.062
Displaying 1-20 of 36 results.
Comparing SCN2A expression between groupsFDR
ESC H9[53 days] VS fetal human cortex 1[12 weeks post-conception]NS
ESC H9[53 days] VS fetal human cortex 2[13 weeks post-conception]NS
ESC H9[53 days] VS iPSC 409B2[33 days]0.0256792802392283
ESC H9[53 days] VS iPSC 409B2[35 days]0.00413921309814885
ESC H9[53 days] VS iPSC 409B2[37 days]0.0310831795164297
ESC H9[53 days] VS iPSC 409B2[41 days]0.0280570950718815
ESC H9[53 days] VS iPSC 409B2[58 days]NS
ESC H9[53 days] VS iPSC 409B2[65 days]NS
fetal human cortex 1[12 weeks post-conception] VS fetal human cortex 2[13 weeks post-conception]NS
fetal human cortex 1[12 weeks post-conception] VS iPSC 409B2[33 days]0.000108358206212368
fetal human cortex 1[12 weeks post-conception] VS iPSC 409B2[35 days]4.67799110391713e-06
fetal human cortex 1[12 weeks post-conception] VS iPSC 409B2[37 days]0.000250100220608814
fetal human cortex 1[12 weeks post-conception] VS iPSC 409B2[41 days]0.000159367372555061
fetal human cortex 1[12 weeks post-conception] VS iPSC 409B2[58 days]NS
fetal human cortex 1[12 weeks post-conception] VS iPSC 409B2[65 days]NS
fetal human cortex 2[13 weeks post-conception] VS iPSC 409B2[33 days]0.00268267021635562
fetal human cortex 2[13 weeks post-conception] VS iPSC 409B2[35 days]0.000924076142511008
fetal human cortex 2[13 weeks post-conception] VS iPSC 409B2[37 days]0.0078384397217871
fetal human cortex 2[13 weeks post-conception] VS iPSC 409B2[41 days]0.00302962359173082
fetal human cortex 2[13 weeks post-conception] VS iPSC 409B2[58 days]NS
NS represents no significant differential expression between two groups was detected by using the BPSC method.

Top 100 positive and negative correlated genes for SCN2A

Top correlated genes were calculated by using Spearman rank correlation. Enrichment analysis can be performed on DAVID server using its API, while alternative links are also provided.

KEGG GO Others   

 ESC H9[53 days][96]
 fetal human cortex 1[12 weeks post-conception][164]
 fetal human cortex 2[13 weeks post-conception][62]
 iPSC 409B2[33 days][40]
 iPSC 409B2[35 days][68]
 iPSC 409B2[37 days][71]
 iPSC 409B2[41 days][74]
 iPSC 409B2[58 days][79]
 iPSC 409B2[65 days][80]