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scRNASeqDB
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Gene View

General Information

SMCHD1[ENSG00000101596]

Synonyms-
Descriptionstructural maintenance of chromosomes flexible hinge domain containing 1
Chromosome18p11.32
Database ReferenceMIM:614982 HGNC:29090 Vega:OTTHUMG00000178235 
See relatedTHE HUMAN PROTEIN ATLAS
DatasetGSE67980

Gene Rank

Gene Expression

 

Displaying 1-8 of 8 results.
SMCHD1 expression in each cell groupMinimum Value (Read count)Median Value (Read count)Maximum Value (Read count)
candidate PCa CTC CRPC005,228
candidate PCa CTC CSPC007,898
lineage-confirmed PCa CTC CRPC enzalutamide-naive (Group A)004,288
lineage-confirmed PCa CTC CRPC progressed on enzalutamide (Group B)012,398
lineage-confirmed PCa CTC CSPC enzalutamide-naive (Group A)013
PCa cell line073937
white blood cell CRPC00.51
white blood cell healthy05116,450
Displaying 1-20 of 28 results.
Comparing SMCHD1 expression between groupsFDR
PCa cell line VS white blood cell CRPC0.00766007016184616
PCa cell line VS white blood cell healthy0.00269040672517182
candidate PCa CTC CRPC VS PCa cell lineNS
candidate PCa CTC CRPC VS candidate PCa CTC CSPCNS
candidate PCa CTC CRPC VS lineage-confirmed PCa CTC CRPC enzalutamide-naive (Group A)NS
candidate PCa CTC CRPC VS lineage-confirmed PCa CTC CRPC progressed on enzalutamide (Group B)NS
candidate PCa CTC CRPC VS lineage-confirmed PCa CTC CSPC enzalutamide-naive (Group A)NS
candidate PCa CTC CRPC VS white blood cell CRPCNS
candidate PCa CTC CRPC VS white blood cell healthyNS
candidate PCa CTC CSPC VS PCa cell lineNS
candidate PCa CTC CSPC VS lineage-confirmed PCa CTC CRPC enzalutamide-naive (Group A)NS
candidate PCa CTC CSPC VS lineage-confirmed PCa CTC CRPC progressed on enzalutamide (Group B)NS
candidate PCa CTC CSPC VS lineage-confirmed PCa CTC CSPC enzalutamide-naive (Group A)0.0351608539970638
candidate PCa CTC CSPC VS white blood cell CRPCNS
candidate PCa CTC CSPC VS white blood cell healthyNS
lineage-confirmed PCa CTC CRPC enzalutamide-naive (Group A) VS PCa cell lineNS
lineage-confirmed PCa CTC CRPC enzalutamide-naive (Group A) VS lineage-confirmed PCa CTC CRPC progressed on enzalutamide (Group B)NS
lineage-confirmed PCa CTC CRPC enzalutamide-naive (Group A) VS lineage-confirmed PCa CTC CSPC enzalutamide-naive (Group A)NS
lineage-confirmed PCa CTC CRPC enzalutamide-naive (Group A) VS white blood cell CRPCNS
lineage-confirmed PCa CTC CRPC enzalutamide-naive (Group A) VS white blood cell healthyNS
NS represents no significant differential expression between two groups was detected by using the BPSC method.

Top 100 positive and negative correlated genes for SMCHD1

Top correlated genes were calculated by using Spearman rank correlation. Enrichment analysis can be performed on DAVID server using its API, while alternative links are also provided.

KEGG GO Others   

 candidate PCa CTC CRPC[33]
 candidate PCa CTC CSPC[12]
 lineage-confirmed PCa CTC CRPC enzalutamide-naive (Group A)[37]
 lineage-confirmed PCa CTC CRPC progressed on enzalutamide (Group B)[36]
 lineage-confirmed PCa CTC CSPC enzalutamide-naive (Group A)[4]
 PCa cell line[30]
 white blood cell CRPC[2]
 white blood cell healthy[3]