gene,0,0 GSM967508,0,2187.707 GSM967509,0,2168.231 GSM967510,0,2298.381 GSM967511,0,1311.229 GSM967512,0,2308.275 GSM967513,0,2861.445 GSM967514,0,2863.878 GSM967515,0,3491.69 GSM967516,0,74.991 GSM967517,0,263.517 GSM967518,0,45.545 GSM967519,0,84.988 GSM967520,0,71.231 GSM967521,0,25.604 GSM967535,0,522.278 GSM967536,0,941.404 GSM967537,0,896.362 GSM967538,0,419.108 GSM967539,0,628.976 GSM967540,0,289.54 GSM967541,0,115.06 GSM967542,0,196.006 GSM967543,0,87.056 GSM967544,0,36.633 GSM967545,0,1117.745 GSM967546,0,2216.272 GSM967547,0,2923.885 GSM967548,0,2806.557 GSM967549,0,2962.151 GSM967550,0,3053.331 GSM967551,0,144.07 GSM967552,0,330.54 GSM967553,0,91.148 GSM967554,0,94.811 GSM967555,0,6285.765 GSM967556,0,5735.712 GSM967557,0,4295.336
| Synonyms | C6orf160;LINC00044;NCRNA00044;U50HG;bA33E24.2 |
| Description | small nucleolar RNA host gene 5 |
|---|---|
| Chromosome | 6q14.3 |
| Database Reference | MIM:613263 HGNC:21026 |
| See related | THE HUMAN PROTEIN ATLAS |
| Dataset | GSE38495 |
| SNHG5 expression in each cell group | Minimum Value (TPM) | Median Value (TPM) | Maximum Value (TPM) |
|---|---|---|---|
| Embryonic stem cell | 1,311.229 | 2,303.328 | 3,491.69 |
| LNCaP cell | 25.604 | 73.111 | 263.517 |
| NG2-sorted cell from blood | 289.54 | 575.627 | 941.404 |
| PC3 cell | 36.633 | 101.058 | 196.006 |
| Primary melanocyte | 1,117.745 | 1,667.008 | 2,216.272 |
| SKMEL5 cell | 2,806.557 | 2,943.018 | 3,053.331 |
| T24 cell | 91.148 | 119.441 | 330.54 |
| UACC257 cell | 4,295.336 | 5,735.712 | 6,285.765 |
| Comparing SNHG5 expression between groups | FDR |
|---|---|
| Embryonic stem cell VS LNCaP cell | 7.2052178476037e-05 |
| Embryonic stem cell VS NG2-sorted cell from blood | 0.000792705175664832 |
| Embryonic stem cell VS PC3 cell | 0.000149295432566066 |
| Embryonic stem cell VS Primary melanocyte | NS |
| Embryonic stem cell VS SKMEL5 cell | NS |
| Embryonic stem cell VS T24 cell | 0.000418681471888485 |
| Embryonic stem cell VS UACC257 cell | 0.0371743237124349 |
| LNCaP cell VS NG2-sorted cell from blood | 0.0209325506705081 |
| LNCaP cell VS PC3 cell | NS |
| LNCaP cell VS Primary melanocyte | NS |
| LNCaP cell VS SKMEL5 cell | 0.00358912748453847 |
| LNCaP cell VS T24 cell | NS |
| LNCaP cell VS UACC257 cell | 0.0135372910159975 |
| NG2-sorted cell from blood VS PC3 cell | 0.0227278585547642 |
| NG2-sorted cell from blood VS Primary melanocyte | NS |
| NG2-sorted cell from blood VS SKMEL5 cell | 0.0117368909905085 |
| NG2-sorted cell from blood VS T24 cell | NS |
| NG2-sorted cell from blood VS UACC257 cell | 0.0272754949852692 |
| PC3 cell VS Primary melanocyte | NS |
| PC3 cell VS SKMEL5 cell | 0.00788897676255235 |
Top correlated genes were calculated by using Spearman rank correlation. Enrichment analysis can be performed on DAVID server using its API, while alternative links are also provided.
KEGG GO Others Embryonic stem cell[8]
LNCaP cell[6]
NG2-sorted cell from blood[6]
PC3 cell[4]
Primary melanocyte[2]
SKMEL5 cell[4]
T24 cell[4]
UACC257 cell[3]
