gene,0,0 GSM967508,0,128.508 GSM967509,0,177.097 GSM967510,0,252.655 GSM967511,0,116.183 GSM967512,0,70.893 GSM967513,0,240.325 GSM967514,0,236.96 GSM967515,0,173.855 GSM967516,0,0.294 GSM967517,0,0.431 GSM967518,0,0.036 GSM967519,0,0.057 GSM967520,0,0.047 GSM967521,0,0.017 GSM967535,0,0 GSM967536,0,4.532 GSM967537,0,0 GSM967538,0,25.212 GSM967539,0,0.041 GSM967540,0,0.021 GSM967541,0,3.894 GSM967542,0,17.654 GSM967543,0,0.027 GSM967544,0,1.35 GSM967545,0,0 GSM967546,0,0.034 GSM967547,0,0.722 GSM967548,0,3.021 GSM967549,0,4.022 GSM967550,0,57.596 GSM967551,0,0.643 GSM967552,0,29.778 GSM967553,0,3.995 GSM967554,0,2.742 GSM967555,0,0.249 GSM967556,0,0.026 GSM967557,0,0.018
| Synonyms | CSPG2;ERVR;GHAP;PG-M;WGN;WGN1 |
| Description | versican |
|---|---|
| Chromosome | 5q14.3 |
| Database Reference | MIM:118661 HGNC:2464 HPRD:00340 Vega:OTTHUMG00000131321 |
| See related | THE HUMAN PROTEIN ATLAS |
| Dataset | GSE38495 |
| VCAN expression in each cell group | Minimum Value (TPM) | Median Value (TPM) | Maximum Value (TPM) |
|---|---|---|---|
| Embryonic stem cell | 70.893 | 175.476 | 252.655 |
| LNCaP cell | 0.017 | 0.052 | 0.431 |
| NG2-sorted cell from blood | 0 | 0.031 | 25.212 |
| PC3 cell | 0.027 | 2.622 | 17.654 |
| Primary melanocyte | 0 | 0.017 | 0.034 |
| SKMEL5 cell | 0.722 | 3.521 | 57.596 |
| T24 cell | 0.643 | 3.369 | 29.778 |
| UACC257 cell | 0.018 | 0.026 | 0.249 |
| Comparing VCAN expression between groups | FDR |
|---|---|
| Embryonic stem cell VS LNCaP cell | 0.000395652368302848 |
| Embryonic stem cell VS NG2-sorted cell from blood | 0.00536448847789128 |
| Embryonic stem cell VS PC3 cell | 0.00363769066628107 |
| Embryonic stem cell VS Primary melanocyte | NS |
| Embryonic stem cell VS SKMEL5 cell | 0.0393000047590623 |
| Embryonic stem cell VS T24 cell | 0.00901619368352365 |
| Embryonic stem cell VS UACC257 cell | NS |
| LNCaP cell VS NG2-sorted cell from blood | NS |
| LNCaP cell VS PC3 cell | 0.0448862932760075 |
| LNCaP cell VS Primary melanocyte | NS |
| LNCaP cell VS SKMEL5 cell | 0.0193958130336812 |
| LNCaP cell VS T24 cell | 0.0274059505428622 |
| LNCaP cell VS UACC257 cell | NS |
| NG2-sorted cell from blood VS PC3 cell | NS |
| NG2-sorted cell from blood VS Primary melanocyte | NS |
| NG2-sorted cell from blood VS SKMEL5 cell | NS |
| NG2-sorted cell from blood VS T24 cell | NS |
| NG2-sorted cell from blood VS UACC257 cell | NS |
| PC3 cell VS Primary melanocyte | NS |
| PC3 cell VS SKMEL5 cell | NS |
Top correlated genes were calculated by using Spearman rank correlation. Enrichment analysis can be performed on DAVID server using its API, while alternative links are also provided.
KEGG GO Others Embryonic stem cell[8]
LNCaP cell[6]
NG2-sorted cell from blood[6]
PC3 cell[4]
Primary melanocyte[2]
SKMEL5 cell[4]
T24 cell[4]
UACC257 cell[3]
