Gene: APAF1

Basic information

Tag Content
Uniprot ID O14727; B2RMX8; O43297; Q7Z438; Q9BXZ6; Q9UBZ5; Q9UGN8; Q9UGN9; Q9UGP0; Q9UJ58; Q9UJ59; Q9UJ60; Q9UJ61; Q9UJ62; Q9UJ63; Q9UJ64; Q9UJ65; Q9UJ66; Q9UJ67; Q9UNC9;
Entrez ID 317
Genbank protein ID CAB55588.1; AAK28401.1; AAI36532.1; BAA24843.2; CAB55587.1; CAB55579.1; CAB55580.1; CAB65087.1; CAB55585.1; AAI36533.1; CAB55581.1; CAB55584.1; CAB55582.1; BAC77343.1; EAW97606.1; CAB65085.1; AAC51678.1; CAB65086.1; CAB55586.1; AAD34016.1; CAB55583.1; AAD38344.1; CAB56462.1;
Genbank nucleotide ID NM_001160.2; NM_181868.1; NM_181861.1; NM_013229.2; NM_181869.1;
Ensembl protein ID ENSP00000334558; ENSP00000448449; ENSP00000449791; ENSP00000448165; ENSP00000353059; ENSP00000349862; ENSP00000448826;
Ensembl nucleotide ID ENSG00000120868
Gene name Apoptotic protease-activating factor 1
Gene symbol APAF1
Organism Homo sapiens
NCBI taxa ID 9606
Cleft type
Developmental stage
Data sources Homology search
Reference
Functional description Oligomeric Apaf-1 mediates the cytochrome c-dependent autocatalytic activation of pro-caspase-9 (Apaf-3), leading to the activation of caspase-3 and apoptosis. This activation requires ATP. Isoform 6 is less effective in inducing apoptosis.
Sequence
MDAKARNCLL QHREALEKDI KTSYIMDHMI SDGFLTISEE EKVRNEPTQQ QRAAMLIKMI 60
LKKDNDSYVS FYNALLHEGY KDLAALLHDG IPVVSSSSGK DSVSGITSYV RTVLCEGGVP 120
QRPVVFVTRK KLVNAIQQKL SKLKGEPGWV TIHGMAGCGK SVLAAEAVRD HSLLEGCFPG 180
GVHWVSVGKQ DKSGLLMKLQ NLCTRLDQDE SFSQRLPLNI EEAKDRLRIL MLRKHPRSLL 240
ILDDVWDSWV LKAFDSQCQI LLTTRDKSVT DSVMGPKYVV PVESSLGKEK GLEILSLFVN 300
MKKADLPEQA HSIIKECKGS PLVVSLIGAL LRDFPNRWEY YLKQLQNKQF KRIRKSSSYD 360
YEALDEAMSI SVEMLREDIK DYYTDLSILQ KDVKVPTKVL CILWDMETEE VEDILQEFVN 420
KSLLFCDRNG KSFRYYLHDL QVDFLTEKNC SQLQDLHKKI ITQFQRYHQP HTLSPDQEDC 480
MYWYNFLAYH MASAKMHKEL CALMFSLDWI KAKTELVGPA HLIHEFVEYR HILDEKDCAV 540
SENFQEFLSL NGHLLGRQPF PNIVQLGLCE PETSEVYQQA KLQAKQEVDN GMLYLEWINK 600
KNITNLSRLV VRPHTDAVYH ACFSEDGQRI ASCGADKTLQ VFKAETGEKL LEIKAHEDEV 660
LCCAFSTDDR FIATCSVDKK VKIWNSMTGE LVHTYDEHSE QVNCCHFTNS SHHLLLATGS 720
SDCFLKLWDL NQKECRNTMF GHTNSVNHCR FSPDDKLLAS CSADGTLKLW DATSANERKS 780
INVKQFFLNL EDPQEDMEVI VKCCSWSADG ARIMVAAKNK IFLFDIHTSG LLGEIHTGHH 840
STIQYCDFSP QNHLAVVALS QYCVELWNTD SRSKVADCRG HLSWVHGVMF SPDGSSFLTS 900
SDDQTIRLWE TKKVCKNSAV MLKQEVDVVF QENEVMVLAV DHIRRLQLIN GRTGQIDYLT 960
EAQVSCCCLS PHLQYIAFGD ENGAIEILEL VNNRIFQSRF QHKKTVWHIQ FTADEKTLIS 1020
SSDDAEIQVW NWQLDKCIFL RGHQETVKDF RLLKNSRLLS WSFDGTVKVW NIITGNKEKD 1080
FVCHQGTVLS CDISHDATKF SSTSADKTAK IWSFDLLLPL HELRGHNGCV RCSAFSVDST 1140
LLATGDDNGE IRIWNVSNGE LLHLCAPLSE EGAATHGGWV TDLCFSPDGK MLISAGGYIK 1200
WWNVVTGESS QTFYTNGTNL KKIHVSPDFK TYVTVDNLGI LYILQTLE 1248

Abbreviation :
CLO : cleft lip only. CPO : cleft palate only. CLP : cleft lip and palate. CL/P : cleft lip with/without cleft palate.
For humans: CL/P, CLO, CPO, and CLP. For mice: CLO, CLP, and CPO.

Gene expression information

Gene expression in different tissues (GTEx V7)

  

Gene expression in different tissues (ENCODE)

  

Protein structural annotations

3D structure in PDB database

Protein disorder information

Orthologous information

Relation Gene symbol Entrez ID UniProt ID Cleft type Developmental stage Species Evidence Details
1:1 orthologAPAF1A0A452G611Capra hircusPredictionMore>>
1:1 orthologAPAF1317O14727Homo sapiensPredictionMore>>
1:1 orthologApaf111783O88879CPOMus musculusPublicationMore>>
1:1 orthologAPAF1A0A2I3T3Q9Pan troglodytesPredictionMore>>
1:1 orthologApaf178963Q9EPV5Rattus norvegicusPredictionMore>>
1:1 orthologapaf158131A5WVJ8Danio rerioPredictionMore>>

Other genetic variants/mutations

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Disease or phenotype associated information

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Gene Ontology (GO)/biological pathways

GO:Molecular Function

GO ID GO Term Evidence
GO:0000166 nucleotide bindingTAS
GO:0005515 protein bindingIPI
GO:0005524 ATP bindingIEA
GO:0008656 cysteine-type endopeptidase activator activity involved in apoptotic processNAS
GO:0008656 cysteine-type endopeptidase activator activity involved in apoptotic processIBA
GO:0031072 heat shock protein bindingIEA
GO:0042802 identical protein bindingIEA
GO:0043531 ADP bindingIEA

GO:Biological Process

GO ID GO Term Evidence
GO:0001666 response to hypoxiaIEA
GO:0001822 kidney developmentIEA
GO:0001843 neural tube closureIEA
GO:0006915 apoptotic processTAS
GO:0006919 activation of cysteine-type endopeptidase activity involved in apoptotic processIDA
GO:0007399 nervous system developmentTAS
GO:0007568 agingIEA
GO:0007584 response to nutrientIEA
GO:0008635 activation of cysteine-type endopeptidase activity involved in apoptotic process by cytochrome cIBA
GO:0008635 activation of cysteine-type endopeptidase activity involved in apoptotic process by cytochrome cIDA
GO:0008635 activation of cysteine-type endopeptidase activity involved in apoptotic process by cytochrome cTAS
GO:0010659 cardiac muscle cell apoptotic processIEA
GO:0030154 cell differentiationIEA
GO:0030900 forebrain developmentIEA
GO:0042981 regulation of apoptotic processTAS
GO:0043065 positive regulation of apoptotic processTAS
GO:0043312 neutrophil degranulationTAS
GO:0051402 neuron apoptotic processIEA
GO:0070059 intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stressIEA
GO:0070317 negative regulation of G0 to G1 transitionTAS
GO:0071560 cellular response to transforming growth factor beta stimulusIEA
GO:0072432 response to G1 DNA damage checkpoint signalingTAS
GO:0097193 intrinsic apoptotic signaling pathwayTAS
GO:1902510 regulation of apoptotic DNA fragmentationIEA
GO:2001235 positive regulation of apoptotic signaling pathwayIEA

GO:Cellular Component

GO ID GO Term Evidence
GO:0005576 extracellular regionTAS
GO:0005634 nucleusIEA
GO:0005829 cytosolIBA
GO:0005829 cytosolTAS
GO:0032991 protein-containing complexIDA
GO:0034774 secretory granule lumenTAS
GO:0043293 apoptosomeTAS
GO:0043293 apoptosomeIDA
GO:0043293 apoptosomeIBA
GO:0070062 extracellular exosomeHDA
GO:1904813 ficolin-1-rich granule lumenTAS

Reactome Pathway

Reactome ID Reactome Term Evidence
R-HSA-109581 ApoptosisTAS
R-HSA-109581 ApoptosisIEA
R-HSA-109606 Intrinsic Pathway for ApoptosisTAS
R-HSA-109606 Intrinsic Pathway for ApoptosisIEA
R-HSA-111458 Formation of apoptosomeTAS
R-HSA-111458 Formation of apoptosomeIEA
R-HSA-111459 Activation of caspases through apoptosome-mediated cleavageTAS
R-HSA-111461 Cytochrome c-mediated apoptotic responseTAS
R-HSA-111461 Cytochrome c-mediated apoptotic responseIEA
R-HSA-111463 SMAC (DIABLO) binds to IAPs IEA
R-HSA-111464 SMAC(DIABLO)-mediated dissociation of IAP:caspase complexes IEA
R-HSA-111469 SMAC, XIAP-regulated apoptotic responseIEA
R-HSA-111471 Apoptotic factor-mediated responseTAS
R-HSA-111471 Apoptotic factor-mediated responseIEA
R-HSA-168249 Innate Immune SystemTAS
R-HSA-168256 Immune SystemTAS
R-HSA-212436 Generic Transcription PathwayTAS
R-HSA-3700989 Transcriptional Regulation by TP53TAS
R-HSA-5357801 Programmed Cell DeathTAS
R-HSA-5357801 Programmed Cell DeathIEA
R-HSA-5633008 TP53 Regulates Transcription of Cell Death GenesTAS
R-HSA-6798695 Neutrophil degranulationTAS
R-HSA-6803207 TP53 Regulates Transcription of Caspase Activators and CaspasesTAS
R-HSA-73857 RNA Polymerase II TranscriptionTAS
R-HSA-74160 Gene expression (Transcription)TAS
R-HSA-8953750 Transcriptional Regulation by E2F6TAS
R-HSA-9627069 Regulation of the apoptosome activityTAS
R-HSA-9627069 Regulation of the apoptosome activityIEA

Drugs and compounds information

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Functional annotations

Keywords

Keyword ID Keyword Term
KW-0002 3D-structure
KW-0025 Alternative splicing
KW-0053 Apoptosis
KW-0067 ATP-binding
KW-0106 Calcium
KW-0963 Cytoplasm
KW-0903 Direct protein sequencing
KW-0547 Nucleotide-binding
KW-1185 Reference proteome
KW-0677 Repeat
KW-0853 WD repeat

Interpro

InterPro ID InterPro Term
IPR017251 Apaf-1
IPR041452 APAF1_C
IPR037963 APAF1_CARD_dom
IPR001315 CARD
IPR011029 DEATH-like_dom_sf
IPR020472 G-protein_beta_WD-40_rep
IPR002182 NB-ARC
IPR027417 P-loop_NTPase
IPR015943 WD40/YVTN_repeat-like_dom_sf
IPR001680 WD40_repeat
IPR019775 WD40_repeat_CS
IPR017986 WD40_repeat_dom
IPR036322 WD40_repeat_dom_sf
IPR036388 WH-like_DNA-bd_sf

PROSITE

PROSITE ID PROSITE Term
PS50209 CARD
PS00678 WD_REPEATS_1
PS50082 WD_REPEATS_2
PS50294 WD_REPEATS_REGION

Pfam

Pfam ID Pfam Term
PF17908 APAF1_C
PF00619 CARD
PF00931 NB-ARC
PF00400 WD40

Protein-protein interaction

Protein-miRNA interaction