Gene: WNT9B

Basic information

Tag Content
Uniprot ID O14905; Q6UXT4; Q96Q09;
Entrez ID 7484
Genbank protein ID AAC39551.1; AAQ88584.1; BAB70499.1;
Genbank nucleotide ID NM_003396.2
Ensembl protein ID ENSP00000482127; ENSP00000290015;
Ensembl nucleotide ID ENSG00000158955; ENSG00000276799;
Gene name Protein Wnt-9b
Gene symbol WNT9B
Organism Homo sapiens
NCBI taxa ID 9606
Cleft type
Developmental stage
Data sources Manually collected
Reference 24437584; 21462296; 28232668;
Functional description Ligand for members of the frizzled family of seven transmembrane receptors (Probable). Functions in the canonical Wnt/beta-catenin signaling pathway. Required for normal embryonic kidney development, and for normal development of the urogenital tract, including uterus and part of the oviduct and the upper vagina in females, and epididymis and vas deferens in males. Activates a signaling cascade in the metanephric mesenchyme that induces tubulogenesis. Acts upstream of WNT4 in the signaling pathways that mediate development of kidney tubules and the Muellerian ducts. Plays a role in cranofacial development and is required for normal fusion of the palate during embryonic development (By similarity).
Sequence
MRPPPALALA GLCLLALPAA AASYFGLTGR EVLTPFPGLG TAAAPAQGGA HLKQCDLLKL 60
SRRQKQLCRR EPGLAETLRD AAHLGLLECQ FQFRHERWNC SLEGRMGLLK RGFKETAFLY 120
AVSSAALTHT LARACSAGRM ERCTCDDSPG LESRQAWQWG VCGDNLKYST KFLSNFLGSK 180
RGNKDLRARA DAHNTHVGIK AVKSGLRTTC KCHGVSGSCA VRTCWKQLSP FRETGQVLKL 240
RYDSAVKVSS ATNEALGRLE LWAPARQGSL TKGLAPRSGD LVYMEDSPSF CRPSKYSPGT 300
AGRVCSREAS CSSLCCGRGY DTQSRLVAFS CHCQVQWCCY VECQQCVQEE LVYTCKH 357

Abbreviation :
CLO : cleft lip only. CPO : cleft palate only. CLP : cleft lip and palate. CL/P : cleft lip with/without cleft palate.
For humans: CL/P, CLO, CPO, and CLP. For mice: CLO, CLP, and CPO.

Gene expression information

Gene expression in different tissues (GTEx V7)

  

Gene expression in different tissues (ENCODE)

  

Protein structural annotations

3D structure in PDB database

There is no related protein structure for this gene.

Protein disorder information

Orthologous information

Relation Gene symbol Entrez ID UniProt ID Cleft type Developmental stage Species Evidence Details
1:1 orthologWNT9B490919J9P198Canis lupus familiarisPredictionMore>>
1:1 orthologWNT9BA0A452GA54Capra hircusPredictionMore>>
1:1 orthologWNT9B7484O14905Homo sapiensPublicationMore>>
1:1 orthologWnt9b22412O35468CLP,CLOMus musculusPublicationMore>>
1:1 orthologWNT9BA0A287BJB4Sus scrofaPredictionMore>>
1:1 orthologWnt9b303586D3ZFS0Rattus norvegicusPredictionMore>>
1:1 orthologwnt9b565677B6V3E2Danio rerioPredictionMore>>

Identified variants/mutations related to cleft phenotype

Gene symbol Significant Variants/SNPS Methods PubMed ID
WNT9Brs1530364A>GPCR; sequencing24437584
WNT9Brs4968282A>G (decrease risk)Genotyping21462296
WNT9Brs1105127G>CGenotyping21462296
WNT9Brs1530364C>TPCR and sequencing33110311
WNT9Brs4968247G>AGWAS28232668
WNT9Brs1838105G>AGWAS28232668

Other genetic variants/mutations

loading...

Disease or phenotype associated information

loading...

Gene Ontology (GO)/biological pathways

GO:Molecular Function

GO ID GO Term Evidence
GO:0005109 frizzled bindingIBA
GO:0039706 co-receptor bindingIEA
GO:0048018 receptor ligand activityIDA

GO:Biological Process

GO ID GO Term Evidence
GO:0001658 branching involved in ureteric bud morphogenesisIEA
GO:0001701 in utero embryonic developmentIEA
GO:0001932 regulation of protein phosphorylationIEA
GO:0003339 regulation of mesenchymal to epithelial transition involved in metanephros morphogenesisIEA
GO:0007267 cell-cell signalingNAS
GO:0007275 multicellular organism developmentNAS
GO:0009267 cellular response to starvationIEA
GO:0009786 regulation of asymmetric cell divisionIEA
GO:0016055 Wnt signaling pathwayIBA
GO:0016055 Wnt signaling pathwayTAS
GO:0030182 neuron differentiationISS
GO:0030182 neuron differentiationIBA
GO:0030539 male genitalia developmentIEA
GO:0032526 response to retinoic acidNAS
GO:0035150 regulation of tube sizeIEA
GO:0043085 positive regulation of catalytic activityIEA
GO:0045165 cell fate commitmentIBA
GO:0048701 embryonic cranial skeleton morphogenesisIEA
GO:0060021 roof of mouth developmentIEA
GO:0060070 canonical Wnt signaling pathwayIDA
GO:0060071 Wnt signaling pathway, planar cell polarity pathwayIEA
GO:0061038 uterus morphogenesisIEA
GO:0061303 cornea development in camera-type eyeISS
GO:0071300 cellular response to retinoic acidISS
GO:0072003 kidney rudiment formationIEA
GO:0072038 mesenchymal stem cell maintenance involved in nephron morphogenesisIEA
GO:0072044 collecting duct developmentIEA
GO:0072046 establishment of planar polarity involved in nephron morphogenesisIEA
GO:0072174 metanephric tubule formationIEA
GO:0072181 mesonephric duct formationIEA
GO:1902455 negative regulation of stem cell population maintenanceIMP
GO:1904948 midbrain dopaminergic neuron differentiationIMP
GO:1905438 non-canonical Wnt signaling pathway involved in midbrain dopaminergic neuron differentiationIDA

GO:Cellular Component

GO ID GO Term Evidence
GO:0005576 extracellular regionNAS
GO:0005576 extracellular regionTAS
GO:0005615 extracellular spaceIBA

Reactome Pathway

Reactome ID Reactome Term Evidence
R-HSA-162582 Signal TransductionTAS
R-HSA-162582 Signal TransductionIEA
R-HSA-195721 Signaling by WNTTAS
R-HSA-195721 Signaling by WNTIEA
R-HSA-3238698 WNT ligand biogenesis and traffickingTAS
R-HSA-3238698 WNT ligand biogenesis and traffickingIEA
R-HSA-372790 Signaling by GPCRIEA
R-HSA-373080 Class B/2 (Secretin family receptors)IEA
R-HSA-500792 GPCR ligand bindingIEA

Drugs and compounds information

loading...

Functional annotations

Keywords

Keyword ID Keyword Term
KW-0217 Developmental protein
KW-1015 Disulfide bond
KW-0272 Extracellular matrix
KW-0325 Glycoprotein
KW-0449 Lipoprotein
KW-0621 Polymorphism
KW-1185 Reference proteome
KW-0964 Secreted
KW-0732 Signal
KW-0879 Wnt signaling pathway

Interpro

InterPro ID InterPro Term
IPR005817 Wnt
IPR026535 WNT9B
IPR043158 Wnt_C
IPR018161 Wnt_CS

PROSITE

PROSITE ID PROSITE Term
PS00246 WNT1

Pfam

Pfam ID Pfam Term
PF00110 wnt

Protein-protein interaction

Protein-miRNA interaction