Gene: SEC16A

Basic information

Tag Content
Uniprot ID O15027; A1YCA4; J3KNL6; Q4G0D7; Q5SXP0; Q5SXP1; Q8N347; Q96HP1;
Entrez ID 9919
Genbank protein ID AAH98454.1; BAA20769.4; AAH28183.1; ABI78944.1; AAH08332.1;
Genbank nucleotide ID XM_011519257.1; NM_014866.1; XM_005266134.2; NM_001276418.1; XM_011519246.2; XM_011519247.1; XM_011519259.1; XM_011519248.2; XM_011519252.2; XM_011519260.2; XM_011519255.2;
Ensembl protein ID ENSP00000325827
Ensembl nucleotide ID ENSG00000148396
Gene name Protein transport protein Sec16A
Gene symbol SEC16A
Organism Homo sapiens
NCBI taxa ID 9606
Cleft type
Developmental stage
Data sources Manually collected
Reference 26449438
Functional description Acts as a molecular scaffold that plays a key role in the organization of the endoplasmic reticulum exit sites (ERES), also known as transitional endoplasmic reticulum (tER). SAR1A-GTP-dependent assembly of SEC16A on the ER membrane forms an organized scaffold defining an ERES. Required for secretory cargo traffic from the endoplasmic reticulum to the Golgi apparatus (PubMed:17192411, PubMed:17005010, PubMed:17428803, PubMed:21768384, PubMed:22355596). Mediates the recruitment of MIA3/TANGO to ERES (PubMed:28442536). Regulates both conventional (ER/Golgi-dependent) and GORASP2-mediated unconventional (ER/Golgi-independent) trafficking of CFTR to cell membrane (PubMed:28067262). Positively regulates the protein stability of E3 ubiquitin-protein ligases RNF152 and RNF183 and the ER localization of RNF183 (PubMed:29300766). Acts as a RAB10 effector in the regulation of insulin-induced SLC2A4/GLUT4 glucose transporter-enriched vesicles delivery to the cell membrane in adipocytes (By similarity).
Sequence
MQPPPQTVPS GMAGPPPAGN PRSVFWASSP YRRRANNNAA VAPTTCPLQP VTDPFAFSRQ 60
ALQSTPLGSS SKSSPPVLQG PAPAGFSQHP GLLVPHTHAR DSSQGPCEPL PGPLTQPRAH 120
ASPFSGALTP SAPPGPEMNR SAEVGPSSEP EVQTLPYLPH YIPGVDPETS HGGHPHGNMP 180
GLDRPLSRQN PHDGVVTPAA SPSLPQPGLQ MPGQWGPVQG GPQPSGQHRS PCPEGPVPSG 240
VPCATSVPHF PTPSILHQGP GHEQHSPLVA PPAALPSDGR DEVSHLQSGS HLANNSDPES 300
TFRQNPRIVN HWASPELRQN PGVKNEHRPA SALVNPLARG DSPENRTHHP LGAGAGSGCA 360
PLEADSGASG ALAMFFQGGE TENEENLSSE KAGLSGQADF DDFCSSPGLG RPPAPTHVGA 420
GSLCQALLPG PSNEAAGDVW GDTASTGVPD ASGSQYENVE NLEFVQNQEV LPSEPLNLDP 480
SSPSDQFRYG PLPGPAVPRH GAVCHTGAPD ATLHTVHPDS VSSSYSSRSH GRLSGSARPQ 540
ELVGTFIQQE VGKPEDEASG SFFKQIDSSP VGGETDETTV SQNYRGSVSQ PSTPSPPKPT 600
GIFQTSANSS FEPVKSHLVG VKPFEADRAN VVGEVRETCV RQKQCRPAAA LPDASPGNLE 660
QPPDNMETLC APQVCPLPLN STTEAVHMLP HAGAPPLDTV YPAPEKRPSA RTQGPVKCES 720
PATTLWAQSE LPDFGGNVLL APAAPALYVC AKPQPPVVQP PEEAMSGQQS RNPSSAAPVQ 780
SRGGIGASEN LENPPKMGEE EALQSQASSG YASLLSSPPT ESLQNPPVLI AQPDHSYNLA 840
QPINFSVSLS NSHEKNQSWR EALVGDRPAV SSWALGGDSG ENTSLSGIPT SSVLSLSLPS 900
SVAQSNFPQG SGASEMVSNQ PANLLVQPPS QPVPENLVPE SQKDRKAGSA LPGFANSPAG 960
STSVVLVPPA HGTLVPDGNK ANHSSHQEDT YGALDFTLSR TLENPVNVYN PSHSDSLASQ 1020
QSVASHPRQS GPGAPNLDRF YQQVTKDAQG QPGLERAQQE LVPPQQQASP PQLPKAMFSE 1080
LSNPESLPAQ GQAQNSAQSP ASLVLVDAGQ QLPPRPPQSS SVSLVSSGSG QAAVPSEQPW 1140
PQPVPALAPG PPPQDLAAYY YYRPLYDAYQ PQYSLPYPPE PGAASLYYQD VYSLYEPRYR 1200
PYDGAASAYA QNYRYPEPER PSSRASHSSE RPPPRQGYPE GYYSSKSGWS SQSDYYASYY 1260
SSQYDYGDPG HWDRYHYSAR VRDPRTYDRR YWCDAEYDAY RREHSAFGDR PEKRDNNWRY 1320
DPRFTGSFDD DPDPHRDPYG EEVDRRSVHS EHSARSLHSA HSLASRRSSL SSHSHQSQIY 1380
RSHNVAAGSY EAPLPPGSFH GDFAYGTYRS NFSSGPGFPE YGYPADTVWP AMEQVSSRPT 1440
SPEKFSVPHV CARFGPGGQL IKVIPNLPSE GQPALVEVHS MEALLQHTSE QEEMRAFPGP 1500
LAKDDTHKVD VINFAQNKAM KCLQNENLID KESASLLWNF IVLLCRQNGT VVGTDIAELL 1560
LRDHRTVWLP GKSPNEANLI DFTNEAVEQV EEEESGEAQL SFLTGGPAAA ASSLERETER 1620
FRELLLYGRK KDALESAMKN GLWGHALLLA SKMDSRTHAR VMTRFANSLP INDPLQTVYQ 1680
LMSGRMPAAS TCCGDEKWGD WRPHLAMVLS NLNNNMDVES RTMATMGDTL ASRGLLDAAH 1740
FCYLMAQAGF GVYTKKTTKL VLIGSNHSLP FLKFATNEAI QRTEAYEYAQ SLGAETCPLP 1800
SFQVFKFIYS CRLAEMGLAT QAFHYCEAIA KSILTQPHLY SPVLISQLVQ MASQLRLFDP 1860
QLKEKPEEES LAAPTWLVHL QQVERQIKEG AGVWHQDGAL PQQCPGTPSS EMEQLDRPGL 1920
SQPGALGIAN PLLAVPAPSP EHSSPSVRLL PSAPQTLPDG PLASPARVPM FPVPLPPGPL 1980
EPGPGCVTPG PALGFLEPSG PGLPPGVPPL QERRHLLQEA RSPDPGIVPQ EAPVGNSLSE 2040
LSEENFDGKF ANLTPSRTVP DSEAPPGWDR ADSGPTQPPL SLSPAPETKR PGQAAKKETK 2100
EPKKGESWFF RWLPGKKKTE AYLPDDKNKS IVWDEKKNQW VNLNEPEEEK KAPPPPPTSM 2160
PKTVQAAPPA LPGPPGAPVN MYSRRAAGTR ARYVDVLNPS GTQRSEPALA PADFVAPLAP 2220
LPIPSNLFVP TPDAEEPQLP DGTGREGPAA ARGLANPEPA PEPKVLSSAA SLPGSELPSS 2280
RPEGSQGGEL SRCSSMSSLS REVSQHFNQA PGDLPAAGGP PSGAMPFYNP AQLAQACATS 2340
GSSRLGRIGQ RKHLVLN 2357

Abbreviation :
CLO : cleft lip only. CPO : cleft palate only. CLP : cleft lip and palate. CL/P : cleft lip with/without cleft palate.
For humans: CL/P, CLO, CPO, and CLP. For mice: CLO, CLP, and CPO.

Gene expression information

Gene expression in different tissues (GTEx V7)

  

Gene expression in different tissues (ENCODE)

  

Protein structural annotations

3D structure in PDB database

There is no related protein structure for this gene.

Protein disorder information

Orthologous information

Relation Gene symbol Entrez ID UniProt ID Cleft type Developmental stage Species Evidence Details
1:1 orthologSEC16A519689F1N6K7Bos taurusPredictionMore>>
1:1 orthologSEC16A102172363A0A452FDB3Capra hircusPredictionMore>>
1:1 orthologSEC16A9919O15027Homo sapiensPublicationMore>>
1:1 orthologSec16a227648E9QAT4Mus musculusPredictionMore>>
1:1 orthologSEC16A464863A0A2I3RWX9Pan troglodytesPredictionMore>>
1:1 orthologSec16a100360302D3ZN76Rattus norvegicusPredictionMore>>

Identified variants/mutations related to cleft phenotype

Gene symbol Significant Variants/SNPS Methods PubMed ID
SEC16Ac.4484C>T; p.R1495QWES and Sanger sequencing26449438

Other genetic variants/mutations

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Disease or phenotype associated information

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Gene Ontology (GO)/biological pathways

GO:Molecular Function

GO ID GO Term Evidence
GO:0005515 protein bindingIPI

GO:Biological Process

GO ID GO Term Evidence
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transportIMP
GO:0007029 endoplasmic reticulum organizationIMP
GO:0007029 endoplasmic reticulum organizationIDA
GO:0007029 endoplasmic reticulum organizationIBA
GO:0007030 Golgi organizationIBA
GO:0021762 substantia nigra developmentHEP
GO:0032527 protein exit from endoplasmic reticulumISS
GO:0034976 response to endoplasmic reticulum stressIDA
GO:0043000 Golgi to plasma membrane CFTR protein transportIMP
GO:0048208 COPII vesicle coatingIBA
GO:0048208 COPII vesicle coatingTAS
GO:0050821 protein stabilizationIMP
GO:0070863 positive regulation of protein exit from endoplasmic reticulumIBA
GO:0070973 protein localization to endoplasmic reticulum exit siteIBA
GO:0070973 protein localization to endoplasmic reticulum exit siteIMP
GO:0072659 protein localization to plasma membraneISS

GO:Cellular Component

GO ID GO Term Evidence
GO:0000139 Golgi membraneIEA
GO:0005783 endoplasmic reticulumIDA
GO:0005789 endoplasmic reticulum membraneIDA
GO:0005794 Golgi apparatusIDA
GO:0005829 cytosolIDA
GO:0005829 cytosolTAS
GO:0012507 ER to Golgi transport vesicle membraneIBA
GO:0031090 organelle membraneIDA
GO:0048471 perinuclear region of cytoplasmISS
GO:0070971 endoplasmic reticulum exit siteIDA
GO:0070971 endoplasmic reticulum exit siteIBA

Reactome Pathway

Reactome ID Reactome Term Evidence
R-HSA-199977 ER to Golgi Anterograde TransportTAS
R-HSA-199991 Membrane TraffickingTAS
R-HSA-204005 COPII-mediated vesicle transportTAS
R-HSA-392499 Metabolism of proteinsTAS
R-HSA-446203 Asparagine N-linked glycosylationTAS
R-HSA-5653656 Vesicle-mediated transportTAS
R-HSA-597592 Post-translational protein modificationTAS
R-HSA-948021 Transport to the Golgi and subsequent modificationTAS

Drugs and compounds information

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Functional annotations

Keywords

Keyword ID Keyword Term
KW-0025 Alternative splicing
KW-0963 Cytoplasm
KW-0256 Endoplasmic reticulum
KW-0931 ER-Golgi transport
KW-0333 Golgi apparatus
KW-0472 Membrane
KW-0492 Microsome
KW-0597 Phosphoprotein
KW-0621 Polymorphism
KW-0653 Protein transport
KW-1185 Reference proteome
KW-0813 Transport

Interpro

InterPro ID InterPro Term
IPR024298 ACE1_Sec16_Sec31
IPR024880 Sec16
IPR024340 Sec16_CCD

PROSITE

PROSITE ID PROSITE Term

Pfam

Pfam ID Pfam Term
PF12932 Sec16
PF12931 Sec16_C

Protein-protein interaction

Protein-miRNA interaction