Gene: TBX3

Basic information

Tag Content
Uniprot ID O15119; Q8TB20; Q9UKF8;
Entrez ID 6926
Genbank protein ID AAH25258.1; AAF61816.1; AAC12947.1; AAF61207.1; AAD50989.2;
Genbank nucleotide ID NM_005996.3; NM_016569.3;
Ensembl protein ID ENSP00000257566; ENSP00000257567;
Ensembl nucleotide ID ENSG00000135111
Gene name T-box transcription factor TBX3
Gene symbol TBX3
Organism Homo sapiens
NCBI taxa ID 9606
Cleft type
Developmental stage
Data sources Homology search
Reference
Functional description Transcriptional repressor involved in developmental processes. Probably plays a role in limb pattern formation. Acts as a negative regulator of PML function in cellular senescence.
Sequence
MSLSMRDPVI PGTSMAYHPF LPHRAPDFAM SAVLGHQPPF FPALTLPPNG AAALSLPGAL 60
AKPIMDQLVG AAETGIPFSS LGPQAHLRPL KTMEPEEEVE DDPKVHLEAK ELWDQFHKRG 120
TEMVITKSGR RMFPPFKVRC SGLDKKAKYI LLMDIIAADD CRYKFHNSRW MVAGKADPEM 180
PKRMYIHPDS PATGEQWMSK VVTFHKLKLT NNISDKHGFT LAFPSDHATW QGNYSFGTQT 240
ILNSMHKYQP RFHIVRANDI LKLPYSTFRT YLFPETEFIA VTAYQNDKIT QLKIDNNPFA 300
KGFRDTGNGR REKRKQLTLQ SMRVFDERHK KENGTSDESS SEQAAFNCFA QASSPAASTV 360
GTSNLKDLCP SEGESDAEAE SKEEHGPEAC DAAKISTTTS EEPCRDKGSP AVKAHLFAAE 420
RPRDSGRLDK ASPDSRHSPA TISSSTRGLG AEERRSPVRE GTAPAKVEEA RALPGKEAFA 480
PLTVQTDAAA AHLAQGPLPG LGFAPGLAGQ QFFNGHPLFL HPSQFAMGGA FSSMAAAGMG 540
PLLATVSGAS TGVSGLDSTA MASAAAAQGL SGASAATLPF HLQQHVLASQ GLAMSPFGSL 600
FPYPYTYMAA AAAASSAAAS SSVHRHPFLN LNTMRPRLRY SPYSIPVPVP DGSSLLTTAL 660
PSMAAAAGPL DGKVAALAAS PASVAVDSGS ELNSRSSTLS SSSMSLSPKL CAEKEAATSE 720
LQSIQRLVSG LEAKPDRSRS ASP 743

Abbreviation :
CLO : cleft lip only. CPO : cleft palate only. CLP : cleft lip and palate. CL/P : cleft lip with/without cleft palate.
For humans: CL/P, CLO, CPO, and CLP. For mice: CLO, CLP, and CPO.

Gene expression information

Gene expression in different tissues (GTEx V7)

  

Gene expression in different tissues (ENCODE)

  

Protein structural annotations

3D structure in PDB database


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Protein disorder information

Orthologous information

Relation Gene symbol Entrez ID UniProt ID Cleft type Developmental stage Species Evidence Details
1:1 orthologTBX3102185207A0A452EBG9Capra hircusPredictionMore>>
1:1 orthologTBX36926O15119Homo sapiensPredictionMore>>
1:1 orthologTbx321386P70324CPOMus musculusPublicationMore>>
1:1 orthologTBX3740308A0A2I3T7H8Pan troglodytesPredictionMore>>
1:1 orthologTbx3353305Q7TST9Rattus norvegicusPredictionMore>>
1:1 orthologtbx3a556870B8JKS6Danio rerioPredictionMore>>

Other genetic variants/mutations

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Disease or phenotype associated information

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Gene Ontology (GO)/biological pathways

GO:Molecular Function

GO ID GO Term Evidence
GO:0000977 RNA polymerase II regulatory region sequence-specific DNA bindingIBA
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA bindingIDA
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specificISA
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specificISM
GO:0001085 RNA polymerase II transcription factor bindingISS
GO:0001102 RNA polymerase II activating transcription factor bindingISS
GO:0001102 RNA polymerase II activating transcription factor bindingIBA
GO:0001227 DNA-binding transcription repressor activity, RNA polymerase II-specificIDA
GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specificIBA
GO:0005515 protein bindingIPI
GO:0043565 sequence-specific DNA bindingIDA

GO:Biological Process

GO ID GO Term Evidence
GO:0000122 negative regulation of transcription by RNA polymerase IIIDA
GO:0000122 negative regulation of transcription by RNA polymerase IIIBA
GO:0001501 skeletal system developmentIMP
GO:0001568 blood vessel developmentIEA
GO:0001701 in utero embryonic developmentIEA
GO:0001708 cell fate specificationIBA
GO:0001947 heart loopingIBA
GO:0003151 outflow tract morphogenesisIEA
GO:0003167 atrioventricular bundle cell differentiationIEA
GO:0003205 cardiac chamber developmentIBA
GO:0006357 regulation of transcription by RNA polymerase IITAS
GO:0007417 central nervous system developmentIBA
GO:0007569 cell agingIDA
GO:0008284 positive regulation of cell population proliferationIDA
GO:0008284 positive regulation of cell population proliferationIBA
GO:0008595 anterior/posterior axis specification, embryoIMP
GO:0009887 animal organ morphogenesisIDA
GO:0010159 specification of animal organ positionIEA
GO:0019827 stem cell population maintenanceIEA
GO:0021761 limbic system developmentIEA
GO:0030539 male genitalia developmentIMP
GO:0030540 female genitalia developmentIMP
GO:0030857 negative regulation of epithelial cell differentiationIEA
GO:0030879 mammary gland developmentIMP
GO:0032275 luteinizing hormone secretionIMP
GO:0035115 embryonic forelimb morphogenesisIMP
GO:0035116 embryonic hindlimb morphogenesisIEA
GO:0035136 forelimb morphogenesisIDA
GO:0042733 embryonic digit morphogenesisIMP
GO:0043066 negative regulation of apoptotic processIDA
GO:0045662 negative regulation of myoblast differentiationIDA
GO:0045787 positive regulation of cell cycleIDA
GO:0045892 negative regulation of transcription, DNA-templatedIDA
GO:0045944 positive regulation of transcription by RNA polymerase IIIBA
GO:0046884 follicle-stimulating hormone secretionIMP
GO:0048332 mesoderm morphogenesisIMP
GO:0060021 roof of mouth developmentIEA
GO:0060412 ventricular septum morphogenesisIEA
GO:0060444 branching involved in mammary gland duct morphogenesisIEA
GO:0060596 mammary placode formationIEA
GO:0060923 cardiac muscle cell fate commitmentIEA
GO:0060931 sinoatrial node cell developmentIEA
GO:0090398 cellular senescenceIDA
GO:2000648 positive regulation of stem cell proliferationIEA

GO:Cellular Component

GO ID GO Term Evidence
GO:0000790 nuclear chromatinISA
GO:0005634 nucleusIDA
GO:0005634 nucleusIBA

Reactome Pathway

Reactome ID Reactome Term Evidence

Drugs and compounds information

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Functional annotations

Keywords

Keyword ID Keyword Term
KW-0002 3D-structure
KW-0025 Alternative splicing
KW-0217 Developmental protein
KW-0225 Disease mutation
KW-0238 DNA-binding
KW-0539 Nucleus
KW-0597 Phosphoprotein
KW-1185 Reference proteome
KW-0678 Repressor
KW-0804 Transcription
KW-0805 Transcription regulation

Interpro

InterPro ID InterPro Term
IPR008967 p53-like_TF_DNA-bd
IPR036960 T-box_sf
IPR022582 TBX
IPR001699 TF_T-box
IPR018186 TF_T-box_CS

PROSITE

PROSITE ID PROSITE Term
PS01283 TBOX_1
PS01264 TBOX_2
PS50252 TBOX_3

Pfam

Pfam ID Pfam Term
PF00907 T-box
PF12598 TBX

Protein-protein interaction

Protein-miRNA interaction