Gene: FZD6

Basic information

Tag Content
Uniprot ID O60353; B4DRN0; Q6N0A5; Q6P9C3; Q8WXR9;
Entrez ID 8323
Genbank protein ID CAE45715.1; BAA25686.1; BAC05925.1; AAH60836.2; AAD41637.1; EAW91867.1; BAG61342.1; AAL50384.1;
Genbank nucleotide ID NM_003506.3; NM_001164615.1; NM_001164616.1; NM_001317796.1;
Ensembl protein ID ENSP00000351605; ENSP00000429055; ENSP00000429528;
Ensembl nucleotide ID ENSG00000164930
Gene name Frizzled-6
Gene symbol FZD6
Organism Homo sapiens
NCBI taxa ID 9606
Cleft type CL/P
Developmental stage
Data sources Manually collected
Reference 26436110
Functional description Receptor for Wnt proteins. Most of frizzled receptors are coupled to the beta-catenin canonical signaling pathway, which leads to the activation of disheveled proteins, inhibition of GSK-3 kinase, nuclear accumulation of beta-catenin and activation of Wnt target genes. A second signaling pathway involving PKC and calcium fluxes has been seen for some family members, but it is not yet clear if it represents a distinct pathway or if it can be integrated in the canonical pathway, as PKC seems to be required for Wnt-mediated inactivation of GSK-3 kinase. Both pathways seem to involve interactions with G-proteins. May be involved in transduction and intercellular transmission of polarity information during tissue morphogenesis and/or in differentiated tissues. Together with FZD3, is involved in the neural tube closure and plays a role in the regulation of the establishment of planar cell polarity (PCP), particularly in the orientation of asymmetric bundles of stereocilia on the apical faces of a subset of auditory and vestibular sensory cells located in the inner ear (By similarity).
Sequence
MEMFTFLLTC IFLPLLRGHS LFTCEPITVP RCMKMAYNMT FFPNLMGHYD QSIAAVEMEH 60
FLPLANLECS PNIETFLCKA FVPTCIEQIH VVPPCRKLCE KVYSDCKKLI DTFGIRWPEE 120
LECDRLQYCD ETVPVTFDPH TEFLGPQKKT EQVQRDIGFW CPRHLKTSGG QGYKFLGIDQ 180
CAPPCPNMYF KSDELEFAKS FIGTVSIFCL CATLFTFLTF LIDVRRFRYP ERPIIYYSVC 240
YSIVSLMYFI GFLLGDSTAC NKADEKLELG DTVVLGSQNK ACTVLFMLLY FFTMAGTVWW 300
VILTITWFLA AGRKWSCEAI EQKAVWFHAV AWGTPGFLTV MLLAMNKVEG DNISGVCFVG 360
LYDLDASRYF VLLPLCLCVF VGLSLLLAGI ISLNHVRQVI QHDGRNQEKL KKFMIRIGVF 420
SGLYLVPLVT LLGCYVYEQV NRITWEITWV SDHCRQYHIP CPYQAKAKAR PELALFMIKY 480
LMTLIVGISA VFWVGSKKTC TEWAGFFKRN RKRDPISESR RVLQESCEFF LKHNSKVKHK 540
KKHYKPSSHK LKVISKSMGT STGATANHGT SAVAITSHDY LGQETLTEIQ TSPETSMREV 600
KADGASTPRL REQDCGEPAS PAASISRLSG EQVDGKGQAG SVSESARSEG RISPKSDITD 660
TGLAQSNNLQ VPSSSEPSSL KGSTSLLVHP VSGVRKEQGG GCHSDT 706

Abbreviation :
CLO : cleft lip only. CPO : cleft palate only. CLP : cleft lip and palate. CL/P : cleft lip with/without cleft palate.
For humans: CL/P, CLO, CPO, and CLP. For mice: CLO, CLP, and CPO.

Gene expression information

Gene expression in different tissues (GTEx V7)

  

Gene expression in different tissues (ENCODE)

  

Protein structural annotations

3D structure in PDB database

There is no related protein structure for this gene.

Protein disorder information

Orthologous information

Relation Gene symbol Entrez ID UniProt ID Cleft type Developmental stage Species Evidence Details
1:1 orthologFZD6403610F1P9V1Canis lupus familiarisPredictionMore>>
1:1 orthologFZD6A0A452EZH8Capra hircusPredictionMore>>
1:1 orthologFZD68323O60353CL/PHomo sapiensPublicationMore>>
1:1 orthologFzd614368Q61089E14.5Mus musculusPredictionMore>>
1:1 orthologFZD6464327H2R2C6Pan troglodytesPredictionMore>>
1:1 orthologFZD6F1S0R5Sus scrofaPredictionMore>>
1:1 orthologFZD6100344394G1SWP7Oryctolagus cuniculusPredictionMore>>
1:1 orthologFzd6282581G3V6L1Rattus norvegicusPredictionMore>>

Identified variants/mutations related to cleft phenotype

Gene symbol Significant Variants/SNPS Methods PubMed ID
FZD6rs138557689; c.-153+432A>CTargeted sequencing; PCR;WES26436110
FZD6c.1A>G; p.Met1 (homozygous)WES and Sanger sequencing32884998

Other genetic variants/mutations

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Disease or phenotype associated information

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Gene Ontology (GO)/biological pathways

GO:Molecular Function

GO ID GO Term Evidence
GO:0004930 G protein-coupled receptor activityIEA
GO:0005515 protein bindingIPI
GO:0017147 Wnt-protein bindingISS
GO:0017147 Wnt-protein bindingIBA
GO:0017147 Wnt-protein bindingNAS
GO:0031625 ubiquitin protein ligase bindingIPI
GO:0042813 Wnt-activated receptor activityIDA
GO:0042813 Wnt-activated receptor activityIBA
GO:0042813 Wnt-activated receptor activityNAS
GO:0001540 amyloid-beta bindingNAS

GO:Biological Process

GO ID GO Term Evidence
GO:0001843 neural tube closureIEA
GO:0001942 hair follicle developmentIEA
GO:0007186 G protein-coupled receptor signaling pathwayIEA
GO:0007223 Wnt signaling pathway, calcium modulating pathwayTAS
GO:0030168 platelet activationIEA
GO:0033278 cell proliferation in midbrainIEA
GO:0035567 non-canonical Wnt signaling pathwayIDA
GO:0035880 embryonic nail plate morphogenesisIEA
GO:0042472 inner ear morphogenesisIEA
GO:0043433 negative regulation of DNA-binding transcription factor activityIDA
GO:0048105 establishment of body hair planar orientationIEA
GO:0060070 canonical Wnt signaling pathwayIBA
GO:0060071 Wnt signaling pathway, planar cell polarity pathwayNAS
GO:0090090 negative regulation of canonical Wnt signaling pathwayIMP
GO:1904693 midbrain morphogenesisTAS

GO:Cellular Component

GO ID GO Term Evidence
GO:0005789 endoplasmic reticulum membraneISS
GO:0005886 plasma membraneIDA
GO:0005886 plasma membraneIBA
GO:0005886 plasma membraneTAS
GO:0005887 integral component of plasma membraneISS
GO:0009986 cell surfaceIEA
GO:0016021 integral component of membraneIBA
GO:0016324 apical plasma membraneIEA
GO:0016327 apicolateral plasma membraneIEA
GO:0030659 cytoplasmic vesicle membraneIEA

Reactome Pathway

Reactome ID Reactome Term Evidence
R-HSA-162582 Signal TransductionTAS
R-HSA-162582 Signal TransductionIEA
R-HSA-1643685 DiseaseTAS
R-HSA-195721 Signaling by WNTTAS
R-HSA-195721 Signaling by WNTIEA
R-HSA-201681 TCF dependent signaling in response to WNTTAS
R-HSA-372790 Signaling by GPCRIEA
R-HSA-373080 Class B/2 (Secretin family receptors)IEA
R-HSA-3858494 Beta-catenin independent WNT signalingTAS
R-HSA-3858494 Beta-catenin independent WNT signalingIEA
R-HSA-4086398 Ca2+ pathwayTAS
R-HSA-4086398 Ca2+ pathwayIEA
R-HSA-4086400 PCP/CE pathwayIEA
R-HSA-4086400 PCP/CE pathwayTAS
R-HSA-4641263 Regulation of FZD by ubiquitinationTAS
R-HSA-4791275 Signaling by WNT in cancerTAS
R-HSA-500792 GPCR ligand bindingIEA
R-HSA-5340588 RNF mutants show enhanced WNT signaling and proliferationTAS
R-HSA-5663202 Diseases of signal transductionTAS

Drugs and compounds information

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Functional annotations

Keywords

Keyword ID Keyword Term
KW-0025 Alternative splicing
KW-1003 Cell membrane
KW-0968 Cytoplasmic vesicle
KW-0217 Developmental protein
KW-0225 Disease mutation
KW-1015 Disulfide bond
KW-0256 Endoplasmic reticulum
KW-0297 G-protein coupled receptor
KW-0325 Glycoprotein
KW-0472 Membrane
KW-0597 Phosphoprotein
KW-0621 Polymorphism
KW-0675 Receptor
KW-1185 Reference proteome
KW-0732 Signal
KW-0807 Transducer
KW-0812 Transmembrane
KW-1133 Transmembrane helix
KW-0832 Ubl conjugation
KW-0879 Wnt signaling pathway

Interpro

InterPro ID InterPro Term
IPR015526 Frizzled/SFRP
IPR000539 Frizzled/Smoothened_TM
IPR020067 Frizzled_dom
IPR036790 Frizzled_dom_sf
IPR041770 FZ6_CRD
IPR026543 FZD6
IPR017981 GPCR_2-like

PROSITE

PROSITE ID PROSITE Term
PS50038 FZ
PS50261 G_PROTEIN_RECEP_F2_4

Pfam

Pfam ID Pfam Term
PF01534 Frizzled
PF01392 Fz

Protein-protein interaction

Protein-miRNA interaction