Gene: RECQL5

Basic information

Tag Content
Uniprot ID O94762; Q6P4G0; Q9H0B1; Q9P1W7; Q9UNC8;
Entrez ID 9400
Genbank protein ID EAW89292.1; BAA95953.1; AAH63440.1; BAA95954.1; AAH16911.1; CAB66803.3; AAD43062.1; BAA74454.1; BAA95952.1; AAD43061.1;
Genbank nucleotide ID NM_004259.6; XM_017025343.1; NM_001003716.3; XM_017025344.1; NM_001003715.3;
Ensembl protein ID ENSP00000414933; ENSP00000317636; ENSP00000462248; ENSP00000341983; ENSP00000394820;
Ensembl nucleotide ID ENSG00000108469
Gene name ATP-dependent DNA helicase Q5
Gene symbol RECQL5
Organism Homo sapiens
NCBI taxa ID 9606
Cleft type
Developmental stage
Data sources Manually collected
Reference 26449438
Functional description Isoform beta is a DNA helicase that plays an important role in DNA replication, transcription and repair. Inhibits elongation of stalled transcripts at DNA damage sites by binding to the RNA polymerase II subunit POLR2A and blocking the TCEA1 binding site. Required for mitotic chromosome separation after cross-over events and cell cycle progress. Required for efficient DNA repair, including repair of inter-strand cross-links. Stimulates DNA decatenation mediated by TOP2A. Prevents sister chromatid exchange and homologous recombination.
Sequence
MSSHHTTFPF DPERRVRSTL KKVFGFDSFK TPLQESATMA VVKGNKDVFV CMPTGAGKSL 60
CYQLPALLAK GITIVVSPLI ALIQDQVDHL LTLKVRVSSL NSKLSAQERK ELLADLEREK 120
PQTKILYITP EMAASSSFQP TLNSLVSRHL LSYLVVDEAH CVSQWGHDFR PDYLRLGALR 180
SRLGHAPCVA LTATATPQVQ EDVFAALHLK KPVAIFKTPC FRANLFYDVQ FKELISDPYG 240
NLKDFCLKAL GQEADKGLSG CGIVYCRTRE ACEQLAIELS CRGVNAKAYH AGLKASERTL 300
VQNDWMEEKV PVIVATISFG MGVDKANVRF VAHWNIAKSM AGYYQESGRA GRDGKPSWCR 360
LYYSRNDRDQ VSFLIRKEVA KLQEKRGNKA SDKATIMAFD ALVTFCEELG CRHAAIAKYF 420
GDALPACAKG CDHCQNPTAV RRRLEALERS SSWSKTCIGP SQGNGFDPEL YEGGRKGYGD 480
FSRYDEGSGG SGDEGRDEAH KREWNLFYQK QMQLRKGKDP KIEEFVPPDE NCPLKEASSR 540
RIPRLTVKAR EHCLRLLEEA LSSNRQSTRT ADEADLRAKA VELEHETFRN AKVANLYKAS 600
VLKKVADIHR ASKDGQPYDM GGSAKSCSAQ AEPPEPNEYD IPPASHVYSL KPKRVGAGFP 660
KGSCPFQTAT ELMETTRIRE QAPQPERGGE HEPPSRPCGL LDEDGSEPLP GPRGEVPGGS 720
AHYGGPSPEK KAKSSSGGSS LAKGRASKKQ QLLATAAHKD SQSIARFFCR RVESPALLAS 780
APEAEGACPS CEGVQGPPMA PEKYTGEEDG AGGHSPAPPQ TEECLRERPS TCPPRDQGTP 840
EVQPTPAKDT WKGKRPRSQQ ENPESQPQKR PRPSAKPSVV AEVKGSVSAS EQGTLNPTAQ 900
DPFQLSAPGV SLKEAANVVV KCLTPFYKEG KFASKELFKG FARHLSHLLT QKTSPGRSVK 960
EEAQNLIRHF FHGRARCESE ADWHGLCGPQ R 991

Abbreviation :
CLO : cleft lip only. CPO : cleft palate only. CLP : cleft lip and palate. CL/P : cleft lip with/without cleft palate.
For humans: CL/P, CLO, CPO, and CLP. For mice: CLO, CLP, and CPO.

Gene expression information

Gene expression in different tissues (GTEx V7)

  

Gene expression in different tissues (ENCODE)

  

Protein structural annotations

3D structure in PDB database

Protein disorder information

Orthologous information

Relation Gene symbol Entrez ID UniProt ID Cleft type Developmental stage Species Evidence Details
1:1 orthologRECQL5512590E1BKM5Bos taurusPredictionMore>>
1:1 orthologRECQL5483317F1PAG8Canis lupus familiarisPredictionMore>>
1:1 orthologRECQL5102169794A0A452E119Capra hircusPredictionMore>>
1:1 orthologRECQL59400O94762Homo sapiensPublicationMore>>
1:1 orthologRecql5170472Q8VID5Mus musculusPredictionMore>>
1:1 orthologRECQL5G1TZG6Oryctolagus cuniculusPredictionMore>>
1:1 orthologRecql5287834D4ACP5Rattus norvegicusPredictionMore>>
1:1 orthologrecql5566553X1WCM8Danio rerioPredictionMore>>

Identified variants/mutations related to cleft phenotype

Gene symbol Significant Variants/SNPS Methods PubMed ID
RECQL5c.1322C>T; p.R441QWES and Sanger sequencing26449438

Other genetic variants/mutations

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Disease or phenotype associated information

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Gene Ontology (GO)/biological pathways

GO:Molecular Function

GO ID GO Term Evidence
GO:0000993 RNA polymerase II complex bindingIDA
GO:0003676 nucleic acid bindingIEA
GO:0003678 DNA helicase activityNAS
GO:0003678 DNA helicase activityIDA
GO:0005524 ATP bindingIEA
GO:0009378 four-way junction helicase activityIBA
GO:0043138 3'-5' DNA helicase activityIBA

GO:Biological Process

GO ID GO Term Evidence
GO:0000278 mitotic cell cycleIMP
GO:0000724 double-strand break repair via homologous recombinationIBA
GO:0006259 DNA metabolic processNAS
GO:0006260 DNA replicationIMP
GO:0006268 DNA unwinding involved in DNA replicationIBA
GO:0006281 DNA repairIBA
GO:0006281 DNA repairIMP
GO:0006310 DNA recombinationIBA
GO:0032508 DNA duplex unwindingIBA
GO:0034244 negative regulation of transcription elongation from RNA polymerase II promoterIDA
GO:0051301 cell divisionIEA
GO:0051304 chromosome separationIMP
GO:0072757 cellular response to camptothecinIEA
GO:1990414 replication-born double-strand break repair via sister chromatid exchangeIEA
GO:2000042 negative regulation of double-strand break repair via homologous recombinationIEA

GO:Cellular Component

GO ID GO Term Evidence
GO:0005634 nucleusIBA
GO:0005634 nucleusIDA
GO:0005654 nucleoplasmIDA
GO:0005654 nucleoplasmNAS
GO:0005694 chromosomeIBA
GO:0005737 cytoplasmNAS
GO:0005737 cytoplasmIBA
GO:0005829 cytosolIDA
GO:0016591 RNA polymerase II, holoenzymeIDA

Reactome Pathway

Reactome ID Reactome Term Evidence

Drugs and compounds information

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Functional annotations

Keywords

Keyword ID Keyword Term
KW-0002 3D-structure
KW-0025 Alternative splicing
KW-0067 ATP-binding
KW-0131 Cell cycle
KW-0132 Cell division
KW-0963 Cytoplasm
KW-0227 DNA damage
KW-0234 DNA repair
KW-0235 DNA replication
KW-0347 Helicase
KW-0378 Hydrolase
KW-0547 Nucleotide-binding
KW-0539 Nucleus
KW-0597 Phosphoprotein
KW-0621 Polymorphism
KW-1185 Reference proteome

Interpro

InterPro ID InterPro Term
IPR011545 DEAD/DEAH_box_helicase_dom
IPR002464 DNA/RNA_helicase_DEAH_CS
IPR004589 DNA_helicase_ATP-dep_RecQ
IPR014001 Helicase_ATP-bd
IPR001650 Helicase_C
IPR027417 P-loop_NTPase
IPR010716 RECQ5
IPR032284 RecQ_Zn-bd

PROSITE

PROSITE ID PROSITE Term
PS00690 DEAH_ATP_HELICASE
PS51192 HELICASE_ATP_BIND_1
PS51194 HELICASE_CTER

Pfam

Pfam ID Pfam Term
PF00270 DEAD
PF00271 Helicase_C
PF06959 RecQ5
PF16124 RecQ_Zn_bind

Protein-protein interaction