Gene: TGDS

Basic information

Tag Content
Uniprot ID O95455; Q05DQ3; Q2TU31; Q5T3Z2; Q9H1T9;
Entrez ID 23483
Genbank protein ID EAX08941.1; AAD50061.1; AAH33675.1; CAA06840.1; BAG36061.1; EAX08940.1; AAH05284.1; AAT11156.1;
Genbank nucleotide ID NM_014305.3; NM_001304430.1;
Ensembl protein ID ENSP00000261296
Ensembl nucleotide ID ENSG00000088451
Gene name dTDP-D-glucose 4,6-dehydratase
Gene symbol TGDS
Organism Homo sapiens
NCBI taxa ID 9606
Cleft type
Developmental stage
Data sources Homology search
Reference
Functional description
Sequence
MSAACWEEPW GLPGGFAKRV LVTGGAGFIA SHMIVSLVED YPNYMIINLD KLDYCASLKN 60
LETISNKQNY KFIQGDICDS HFVKLLFETE KIDIVLHFAA QTHVDLSFVR AFEFTYVNVY 120
GTHVLVSAAH EARVEKFIYV STDEVYGGSL DKEFDESSPK QPTNPYASSK AAAECFVQSY 180
WEQYKFPVVI TRSSNVYGPH QYPEKVIPKF ISLLQHNRKC CIHGSGLQTR NFLYATDVVE 240
AFLTVLKKGK PGEIYNIGTN FEMSVVQLAK ELIQLIKETN SESEMENWVD YVNDRPTNDM 300
RYPMKSEKIH GLGWRPKVPW KEGIKKTIEW YRENFHNWKN VEKALEPFPV

Abbreviation :
CLO : cleft lip only. CPO : cleft palate only. CLP : cleft lip and palate. CL/P : cleft lip with/without cleft palate.
For humans: CL/P, CLO, CPO, and CLP. For mice: CLO, CLP, and CPO.

Gene expression information

Gene expression in different tissues (GTEx V7)

  

Gene expression in different tissues (ENCODE)

  

Protein structural annotations

3D structure in PDB database

There is no related protein structure for this gene.

Protein disorder information

Orthologous information

Relation Gene symbol Entrez ID UniProt ID Cleft type Developmental stage Species Evidence Details
1:1 orthologTGDS534594A6QLW2Bos taurusPredictionMore>>
1:1 orthologTGDS485521E2QWQ8Canis lupus familiarisPredictionMore>>
1:1 orthologTGDS102170331A0A452FWY8Capra hircusPredictionMore>>
1:1 orthologTGDS23483O95455Homo sapiensPredictionMore>>
1:1 orthologTgds76355Q8VDR7CPOMus musculusPublicationMore>>
1:1 orthologTGDS467299H2Q7P8Pan troglodytesPredictionMore>>
1:1 orthologTGDSF1RP60Sus scrofaPredictionMore>>
1:1 orthologTGDS100354182G1SYY5Oryctolagus cuniculusPredictionMore>>
1:1 orthologTgdsA0A0G2JZS4Rattus norvegicusPredictionMore>>

Other genetic variants/mutations

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Disease or phenotype associated information

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Gene Ontology (GO)/biological pathways

GO:Molecular Function

GO ID GO Term Evidence
GO:0008460 dTDP-glucose 4,6-dehydratase activityIEA

GO:Biological Process

GO ID GO Term Evidence
GO:0009225 nucleotide-sugar metabolic processIEA

GO:Cellular Component

GO ID GO Term Evidence

Reactome Pathway

Reactome ID Reactome Term Evidence

Drugs and compounds information

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Functional annotations

Keywords

Keyword ID Keyword Term
KW-0225 Disease mutation
KW-0456 Lyase
KW-0520 NAD
KW-0621 Polymorphism
KW-1185 Reference proteome

Interpro

InterPro ID InterPro Term
IPR005888 dTDP_Gluc_deHydtase
IPR016040 NAD(P)-bd_dom
IPR036291 NAD(P)-bd_dom_sf

PROSITE

PROSITE ID PROSITE Term

Pfam

Pfam ID Pfam Term
PF16363 GDP_Man_Dehyd

Protein-protein interaction

Protein-miRNA interaction