Gene: F13A1

Basic information

Tag Content
Uniprot ID P00488; Q59HA7; Q8N6X2; Q96P24; Q9BX29;
Entrez ID 2162
Genbank protein ID AAA52489.1; AAL12161.1; BAD92089.1; AAA52488.1; AAH27963.1; AAA52415.1;
Genbank nucleotide ID NM_000129.3
Ensembl protein ID ENSP00000264870
Ensembl nucleotide ID ENSG00000124491
Gene name Coagulation factor XIII A chain
Gene symbol F13A1
Organism Homo sapiens
NCBI taxa ID 9606
Cleft type CPO,CL/P
Developmental stage
Data sources Manually collected
Reference 2888553
Functional description Factor XIII is activated by thrombin and calcium ion to a transglutaminase that catalyzes the formation of gamma-glutamyl-epsilon-lysine cross-links between fibrin chains, thus stabilizing the fibrin clot. Also cross-link alpha-2-plasmin inhibitor, or fibronectin, to the alpha chains of fibrin.
Sequence
MSETSRTAFG GRRAVPPNNS NAAEDDLPTV ELQGVVPRGV NLQEFLNVTS VHLFKERWDT 60
NKVDHHTDKY ENNKLIVRRG QSFYVQIDFS RPYDPRRDLF RVEYVIGRYP QENKGTYIPV 120
PIVSELQSGK WGAKIVMRED RSVRLSIQSS PKCIVGKFRM YVAVWTPYGV LRTSRNPETD 180
TYILFNPWCE DDAVYLDNEK EREEYVLNDI GVIFYGEVND IKTRSWSYGQ FEDGILDTCL 240
YVMDRAQMDL SGRGNPIKVS RVGSAMVNAK DDEGVLVGSW DNIYAYGVPP SAWTGSVDIL 300
LEYRSSENPV RYGQCWVFAG VFNTFLRCLG IPARIVTNYF SAHDNDANLQ MDIFLEEDGN 360
VNSKLTKDSV WNYHCWNEAW MTRPDLPVGF GGWQAVDSTP QENSDGMYRC GPASVQAIKH 420
GHVCFQFDAP FVFAEVNSDL IYITAKKDGT HVVENVDATH IGKLIVTKQI GGDGMMDITD 480
TYKFQEGQEE ERLALETALM YGAKKPLNTE GVMKSRSNVD MDFEVENAVL GKDFKLSITF 540
RNNSHNRYTI TAYLSANITF YTGVPKAEFK KETFDVTLEP LSFKKEAVLI QAGEYMGQLL 600
EQASLHFFVT ARINETRDVL AKQKSTVLTI PEIIIKVRGT QVVGSDMTVT VQFTNPLKET 660
LRNVWVHLDG PGVTRPMKKM FREIRPNSTV QWEEVCRPWV SGHRKLIASM SSDSLRHVYG 720
ELDVQIQRRP SM 732

Abbreviation :
CLO : cleft lip only. CPO : cleft palate only. CLP : cleft lip and palate. CL/P : cleft lip with/without cleft palate.
For humans: CL/P, CLO, CPO, and CLP. For mice: CLO, CLP, and CPO.

Gene expression information

Gene expression in different tissues (GTEx V7)

  

Gene expression in different tissues (ENCODE)

  

Protein structural annotations

3D structure in PDB database

Protein disorder information

Orthologous information

Relation Gene symbol Entrez ID UniProt ID Cleft type Developmental stage Species Evidence Details
1:1 orthologF13A1F1PKX3Canis lupus familiarisPredictionMore>>
1:1 orthologF13A1102169238A0A452FF40Capra hircusPredictionMore>>
1:1 orthologF13A12162P00488CPO,CL/PHomo sapiensPublicationMore>>
1:1 orthologF13a174145Q8BH61Mus musculusPredictionMore>>
1:1 orthologF13A1462413H2QS92Pan troglodytesPredictionMore>>
1:1 orthologF13A1100153504K7GQL2Sus scrofaPredictionMore>>
1:1 orthologF13a160327G3V811Rattus norvegicusPredictionMore>>
1:1 orthologf13a1bF1R1R7Danio rerioPredictionMore>>

Other genetic variants/mutations

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Disease or phenotype associated information

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Gene Ontology (GO)/biological pathways

GO:Molecular Function

GO ID GO Term Evidence
GO:0003810 protein-glutamine gamma-glutamyltransferase activityIBA
GO:0003810 protein-glutamine gamma-glutamyltransferase activityIDA
GO:0046872 metal ion bindingIEA

GO:Biological Process

GO ID GO Term Evidence
GO:0002576 platelet degranulationTAS
GO:0007596 blood coagulationTAS
GO:0018149 peptide cross-linkingIBA
GO:0018149 peptide cross-linkingIDA
GO:0019221 cytokine-mediated signaling pathwayTAS
GO:0072378 blood coagulation, fibrin clot formationIBA
GO:0072378 blood coagulation, fibrin clot formationIDA

GO:Cellular Component

GO ID GO Term Evidence
GO:0005576 extracellular regionTAS
GO:0031093 platelet alpha granule lumenTAS
GO:0062023 collagen-containing extracellular matrixHDA
GO:0072562 blood microparticleHDA

Reactome Pathway

Reactome ID Reactome Term Evidence
R-HSA-109582 HemostasisTAS
R-HSA-114608 Platelet degranulation TAS
R-HSA-1280215 Cytokine Signaling in Immune systemTAS
R-HSA-140875 Common Pathway of Fibrin Clot FormationTAS
R-HSA-140877 Formation of Fibrin Clot (Clotting Cascade)TAS
R-HSA-168256 Immune SystemTAS
R-HSA-449147 Signaling by InterleukinsTAS
R-HSA-6785807 Interleukin-4 and Interleukin-13 signalingTAS
R-HSA-76002 Platelet activation, signaling and aggregationTAS
R-HSA-76005 Response to elevated platelet cytosolic Ca2+TAS

Drugs and compounds information

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Functional annotations

Keywords

Keyword ID Keyword Term
KW-0002 3D-structure
KW-0007 Acetylation
KW-0012 Acyltransferase
KW-0094 Blood coagulation
KW-0106 Calcium
KW-0963 Cytoplasm
KW-0903 Direct protein sequencing
KW-0225 Disease mutation
KW-0325 Glycoprotein
KW-0356 Hemostasis
KW-0479 Metal-binding
KW-0621 Polymorphism
KW-1185 Reference proteome
KW-0964 Secreted
KW-0808 Transferase
KW-0865 Zymogen

Interpro

InterPro ID InterPro Term
IPR034810 Factor_XIII_A
IPR013783 Ig-like_fold
IPR014756 Ig_E-set
IPR038765 Papain-like_cys_pep_sf
IPR002931 Transglutaminase-like
IPR036985 Transglutaminase-like_sf
IPR023608 Transglutaminase_animal
IPR013808 Transglutaminase_AS
IPR008958 Transglutaminase_C
IPR036238 Transglutaminase_C_sf
IPR001102 Transglutaminase_N

PROSITE

PROSITE ID PROSITE Term
PS00547 TRANSGLUTAMINASES

Pfam

Pfam ID Pfam Term
PF00927 Transglut_C
PF01841 Transglut_core
PF00868 Transglut_N

Protein-protein interaction

Protein-miRNA interaction