Gene: ASS1

Basic information

Tag Content
Uniprot ID P00966; Q6LDL2; Q86UZ0; Q96GT4;
Entrez ID 445
Genbank protein ID AAH21676.1; CAA25771.1; AAH09243.1; AAK67487.1; AAA51782.1; AAA51783.1;
Genbank nucleotide ID NM_054012.3; NM_000050.4; XM_005272200.3;
Ensembl protein ID ENSP00000361471; ENSP00000253004; ENSP00000361469;
Ensembl nucleotide ID ENSG00000130707
Gene name Argininosuccinate synthase
Gene symbol ASS1
Organism Homo sapiens
NCBI taxa ID 9606
Cleft type CL/P
Developmental stage
Data sources Manually collected
Reference 20739017
Functional description One of the enzymes of the urea cycle, the metabolic pathway transforming neurotoxic amonia produced by protein catabolism into inocuous urea in the liver of ureotelic animals. Catalyzes the formation of arginosuccinate from aspartate, citrulline and ATP and together with ASL it is responsible for the biosynthesis of arginine in most body tissues.
Sequence
MSSKGSVVLA YSGGLDTSCI LVWLKEQGYD VIAYLANIGQ KEDFEEARKK ALKLGAKKVF 60
IEDVSREFVE EFIWPAIQSS ALYEDRYLLG TSLARPCIAR KQVEIAQREG AKYVSHGATG 120
KGNDQVRFEL SCYSLAPQIK VIAPWRMPEF YNRFKGRNDL MEYAKQHGIP IPVTPKNPWS 180
MDENLMHISY EAGILENPKN QAPPGLYTKT QDPAKAPNTP DILEIEFKKG VPVKVTNVKD 240
GTTHQTSLEL FMYLNEVAGK HGVGRIDIVE NRFIGMKSRG IYETPAGTIL YHAHLDIEAF 300
TMDREVRKIK QGLGLKFAEL VYTGFWHSPE CEFVRHCIAK SQERVEGKVQ VSVLKGQVYI 360
LGRESPLSLY NEELVSMNVQ GDYEPTDATG FININSLRLK EYHRLQSKVT AK 412

Abbreviation :
CLO : cleft lip only. CPO : cleft palate only. CLP : cleft lip and palate. CL/P : cleft lip with/without cleft palate.
For humans: CL/P, CLO, CPO, and CLP. For mice: CLO, CLP, and CPO.

Gene expression information

Gene expression in different tissues (GTEx V7)

  

Gene expression in different tissues (ENCODE)

  

Protein structural annotations

3D structure in PDB database


loading...

Protein disorder information

Orthologous information

Relation Gene symbol Entrez ID UniProt ID Cleft type Developmental stage Species Evidence Details
1:1 orthologASS1280726P14568Bos taurusPredictionMore>>
1:1 orthologASS1A0A452F1Z3Capra hircusPredictionMore>>
1:1 orthologASS1445P00966CL/PHomo sapiensPublicationMore>>
1:1 orthologAss111898P16460E14.5Mus musculusPredictionMore>>
1:1 orthologASS1743223H2QY18Pan troglodytesPredictionMore>>
1:1 ortholog414411A0A480HLI7Sus scrofaPredictionMore>>
1:1 orthologAss125698P09034Rattus norvegicusPredictionMore>>

Identified variants/mutations related to cleft phenotype

Gene symbol Significant Variants/SNPS Methods PubMed ID
ASS1rs7860909A>GPCR-RFLP20739017

Other genetic variants/mutations

loading...

Disease or phenotype associated information

loading...

Gene Ontology (GO)/biological pathways

GO:Molecular Function

GO ID GO Term Evidence
GO:0003723 RNA bindingHDA
GO:0004055 argininosuccinate synthase activityIMP
GO:0004055 argininosuccinate synthase activityIBA
GO:0005515 protein bindingIPI
GO:0005524 ATP bindingIEA
GO:0015643 toxic substance bindingIEA
GO:0016597 amino acid bindingIMP
GO:0042802 identical protein bindingIPI

GO:Biological Process

GO ID GO Term Evidence
GO:0000050 urea cycleIEA
GO:0000050 urea cycleIMP
GO:0000050 urea cycleIBA
GO:0000050 urea cycleTAS
GO:0000052 citrulline metabolic processIMP
GO:0000053 argininosuccinate metabolic processIBA
GO:0000053 argininosuccinate metabolic processIMP
GO:0001822 kidney developmentIEA
GO:0001889 liver developmentIEA
GO:0006526 arginine biosynthetic processIEA
GO:0006526 arginine biosynthetic processIMP
GO:0006526 arginine biosynthetic processIBA
GO:0006531 aspartate metabolic processIMP
GO:0006953 acute-phase responseIEA
GO:0007494 midgut developmentIEA
GO:0007568 agingIEA
GO:0007584 response to nutrientIEA
GO:0007623 circadian rhythmIDA
GO:0010043 response to zinc ionIEA
GO:0010046 response to mycotoxinIEA
GO:0032355 response to estradiolIEA
GO:0045429 positive regulation of nitric oxide biosynthetic processIMP
GO:0060416 response to growth hormoneIEA
GO:0060539 diaphragm developmentIEA
GO:0071222 cellular response to lipopolysaccharideIEA
GO:0071230 cellular response to amino acid stimulusIEA
GO:0071242 cellular response to ammonium ionIEA
GO:0071320 cellular response to cAMPIEA
GO:0071346 cellular response to interferon-gammaIEA
GO:0071356 cellular response to tumor necrosis factorIEA
GO:0071377 cellular response to glucagon stimulusIEA
GO:0071400 cellular response to oleic acidIEA
GO:0071418 cellular response to amine stimulusIEA
GO:0071499 cellular response to laminar fluid shear stressIMP
GO:0071549 cellular response to dexamethasone stimulusIEA
GO:1903038 negative regulation of leukocyte cell-cell adhesionIMP

GO:Cellular Component

GO ID GO Term Evidence
GO:0005634 nucleusIEA
GO:0005737 cytoplasmIBA
GO:0005741 mitochondrial outer membraneIEA
GO:0005764 lysosomeIEA
GO:0005783 endoplasmic reticulumIEA
GO:0005829 cytosolIDA
GO:0005829 cytosolTAS
GO:0043204 perikaryonIEA
GO:0070062 extracellular exosomeHDA
GO:0070852 cell body fiberIEA

Reactome Pathway

Reactome ID Reactome Term Evidence
R-HSA-1430728 MetabolismTAS
R-HSA-70635 Urea cycleTAS
R-HSA-71291 Metabolism of amino acids and derivativesTAS

Drugs and compounds information

loading...

Functional annotations

Keywords

Keyword ID Keyword Term
KW-0002 3D-structure
KW-0007 Acetylation
KW-0028 Amino-acid biosynthesis
KW-0055 Arginine biosynthesis
KW-0067 ATP-binding
KW-0963 Cytoplasm
KW-0903 Direct protein sequencing
KW-0225 Disease mutation
KW-0436 Ligase
KW-0547 Nucleotide-binding
KW-0597 Phosphoprotein
KW-0621 Polymorphism
KW-1185 Reference proteome
KW-0835 Urea cycle

Interpro

InterPro ID InterPro Term
IPR001518 Arginosuc_synth
IPR018223 Arginosuc_synth_CS
IPR023434 Arginosuc_synth_type_1_subfam
IPR024074 AS_cat/multimer_dom_body
IPR014729 Rossmann-like_a/b/a_fold

PROSITE

PROSITE ID PROSITE Term
PS00564 ARGININOSUCCIN_SYN_1
PS00565 ARGININOSUCCIN_SYN_2

Pfam

Pfam ID Pfam Term
PF00764 Arginosuc_synth

Protein-protein interaction

Protein-miRNA interaction